Award Abstract # 2340818
CAREER: Systems Microbiology and InterdiscipLinary Education for Halting Environmental Antibiotic Resistance Transmission (SMILE HEART)

NSF Org: CBET
Division of Chemical, Bioengineering, Environmental, and Transport Systems
Recipient: THE RESEARCH FOUNDATION FOR THE STATE UNIVERSITY OF NEW YORK
Initial Amendment Date: January 8, 2024
Latest Amendment Date: January 8, 2024
Award Number: 2340818
Award Instrument: Continuing Grant
Program Manager: Sunny Jiang
cjiang@nsf.gov
 (703)292-7858
CBET
 Division of Chemical, Bioengineering, Environmental, and Transport Systems
ENG
 Directorate for Engineering
Start Date: May 1, 2024
End Date: April 30, 2029 (Estimated)
Total Intended Award Amount: $558,749.00
Total Awarded Amount to Date: $433,247.00
Funds Obligated to Date: FY 2024 = $433,247.00
History of Investigator:
  • Yaqi You (Principal Investigator)
    yyou@esf.edu
Recipient Sponsored Research Office: SUNY College of Environmental Science and Forestry
1 FORESTRY DR
SYRACUSE
NY  US  13210-2712
(315)470-6606
Sponsor Congressional District: 22
Primary Place of Performance: THE RESEARCH FOUNDATION FOR THE STATE UNIVERSITY OF NEW YORK
1 Forestry Drive
Syracuse
NY  US  13210-2712
Primary Place of Performance
Congressional District:
22
Unique Entity Identifier (UEI): LVVEB3CF8MB8
Parent UEI:
NSF Program(s): EnvE-Environmental Engineering
Primary Program Source: 01002829DB NSF RESEARCH & RELATED ACTIVIT
01002425DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 1045
Program Element Code(s): 144000
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.041

ABSTRACT

Bacterial antibiotic resistance (AR) infections are among the top 10 threats to global public health. In the United States alone, more than 2.8 million bacterial AR infections are reported each year, causing at least 35,000 deaths and approximately $55 billion in economic losses. Bacterial AR has an environmental origin, develops, and transmits within and between ecosystems and poses a risk to human health through environmental exposure and/or ingestion of food and drinking water. Recent studies have established that horizontal gene transfer (HGT) that mediates DNA exchange between individual cells not connected by inheritance is pivotal in controlling the development and transmission of antibiotic resistance genes (ARGs) in the environment and to bacterial pathogens of clinical relevance. The overarching goal of this CAREER project is to design, develop and evaluate new solutions to mitigate and curb the transmission of AR genes in agricultural soils and their potential transfer to pathogens via HGT. To advance this goal, the Principal Investigator proposes to test the hypothesis that 1) mixtures of non-antibiotic micropollutants (NAMPs) at environmentally relevant concentrations promote the transmission of ARGs in agricultural soils via HGT and 2) this adverse outcome can be mitigated by inhibiting the type IV secretion system (T4SS), the biological assembly that mediates HGT in prokaryotes, using the natural product rottlerin. The successful completion of this project will benefit society through the generation of new fundamental knowledge to advance the design and deployment of more cost-effective and sustainable solutions to mitigate and prevent the development and transmission of ARGs in agricultural soils. Additional benefits to society will be achieved through student education and training including the mentoring of one graduate student and one undergraduate student at the State University of New York College of Environmental Science and Forestry.

Horizontal gene transfer (HGT) plays an essential role in antibiotic resistance (AR) dissemination and is at the heart of the challenge associated with the risk of environmental reservoirs of antibiotic resistance genes (ARGs). Escalated HGT in hotspots during hot moments such as agricultural soils receiving manure or biosolids represents a significant risk. Although a broad range of non-antibiotic micropollutants (NAMPs) have now been detected in raw and treated manure biosolids and soils receiving manure or biosolids, little is known about the impact of these micropollutants on HGT-mediated transmission of ARGs in agricultural soils. This CAREER project will address these critical knowledge gaps. The specific objectives of the research are to 1) develop a mechanistic understanding of NAMP-induced HGT in model agricultural soils (alfisols and mollisols) by combining model-assisted quantification and transcriptome analysis; (2) identify eco-evolutionary controls of the scope of NAMP-induced HGT in the model agricultural soils by combining multi-omics analyses, microfluidic-assisted in situ observations and data science, and; (3) demonstrate the effectiveness of rottlerin (a polyphenol natural product) as a broad-spectrum inhibitor of HGT in agricultural soils; and (4) elucidate the molecular-to-community mechanisms of the HGT mitigating effect of rottlerin in agricultural soils and complex microbial systems with a focus on network interactions. The successful completion of this project has the potential for transformative impact through the generation of new fundamental knowledge to advance the design and implementation of cost-effective solutions to control and mitigate NAMP-induced HGT of ARGs in agriculture soils. To implement the educational and training goals of this CAREER project, the Principal Investigator (PI) proposes to leverage ongoing programs at the State University of New York College of Environmental Science and Forestry (ESF) and collaborations with multiple partners in Upstate New York to (1) develop an interdisciplinary curriculum that implements team science to foster cross-disciplinary collaboration among ESF students and 2) design and deliver a vertically integrated summer program (SMILE HEART UP) to broaden participation in STEM. In addition, the PI plans to leverage the research findings from this project to design high school course modules and organize a workshop for teachers to facilitate the dissemination of the education modules across the State of New York.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

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