Award Abstract # 2305608
Collaborative Research: Testing Evolutionary Pseudocongruence Along the Baja California Peninsula Through Integration of Geologic and Genomic Data

NSF Org: EAR
Division Of Earth Sciences
Recipient: UNIVERSITY OF ALABAMA AT BIRMINGHAM
Initial Amendment Date: November 14, 2022
Latest Amendment Date: February 3, 2023
Award Number: 2305608
Award Instrument: Continuing Grant
Program Manager: Richard Yuretich
ryuretic@nsf.gov
 (703)292-4744
EAR
 Division Of Earth Sciences
GEO
 Directorate for Geosciences
Start Date: October 1, 2022
End Date: September 30, 2026 (Estimated)
Total Intended Award Amount: $838,431.00
Total Awarded Amount to Date: $450,191.00
Funds Obligated to Date: FY 2019 = $356,088.00
FY 2021 = $94,103.00
History of Investigator:
  • Greer Dolby (Principal Investigator)
    gdolby@uab.edu
Recipient Sponsored Research Office: University of Alabama at Birmingham
701 S 20TH STREET
BIRMINGHAM
AL  US  35294-0001
(205)934-5266
Sponsor Congressional District: 07
Primary Place of Performance: University of Alabama at Birmingham
701 S 20TH ST
BIRMINGHAM
AL  US  35294-0001
Primary Place of Performance
Congressional District:
07
Unique Entity Identifier (UEI): YND4PLMC9AN7
Parent UEI:
NSF Program(s): Evolutionary Processes,
EAR-Earth Sciences Research,
XC-Crosscutting Activities Pro
Primary Program Source: 01001920DB NSF RESEARCH & RELATED ACTIVIT
01002122DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s):
Program Element Code(s): 112700, 689800, 722200
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.050, 47.074

ABSTRACT

A primary goal of research in earth and biological sciences is to understand how diverse processes such as tectonic activity, rainfall gradients, and glacially driven climate cycles shape evolution and biodiversity over time. The central Baja California peninsula, Mexico, hosts a previously documented pattern of genetic divergence between northern and southern populations that is observed in dozens of species, but the underlying controls on this divergence pattern are presently unknown. This project aims to test three processes that may control biodiversity along the 1000-km long peninsula, through an integrative study of geological, ecological and genomic datasets. One societal benefit of this work will be to leverage 'big data' and quantitatively integrate new types datasets for scientific discovery. Among other benefits, the PIs will mentor and train postdoctoral researchers, graduate students, and undergraduate students in best practices of transdisciplinary research that are necessary to keep the U.S. globally competitive in innovation. This work will include collaboration with Mexican scientists and will be coordinated with two other studies in central Baja California that are currently funded by NSF. The team will create a series of short training videos to demonstrate common fieldwork techniques, and a set of animations to summarize the geological and biological history of Baja California with the goal of communicating interdisciplinary geo-biological concepts to non-specialists. The PIs will host a community workshop to advance Earth-Life research, and implement an art-science collaborative course between Arizona State University and the University of Arizona.

This study will test three hypotheses to explain a previously documented pattern of north-south genetic divergence across the central Baja California peninsula: (1) populations were isolated by a physical barrier (marine seaway) in the mid-Peninsular region during Pliocene time; (2) Pleistocene glaciations isolated populations in refugia; and (3) monsoon-driven differences in rainfall timing isolated species through asynchronous reproduction and/or differential adaptation to precipitation regimes. The team will map and date structural, stratigraphic, and volcanic features in the mid-Peninsular region where the divergence occurs; use modern geochronologic methods to constrain the timing of deposition, volcanism, deformation and uplift; evaluate low-coverage genomes of angiosperms, reptiles, and mammals to assess population genomic signatures, loci under local adaptation, and spatial patterns of allelic variation; assess seasonal gene expression; develop niche models for modern and glacial climates; and test for present-day niche divergence. This study will embrace geological and climatic complexity to understand extrinsic factors that control genome evolution and diversification and explore how biological evolution can be driven by multiple co-occurring processes through time (pseudocongruence). Our approach uses cutting-edge geological, biological and statistical methods within an evolutionary framework to integrate organismal genomic evolution with co-occurring changes in the physical environment. These findings will advance our understanding of geobiology at meso-organizational scales (i.e., intermediate between microbial and global), and will generate new strategies to test for diverse factors that drive evolution. Results of this research will provide foundational steps toward developing new predictive models of Earth-Life evolution that can be applied to deeper timescales and other geobiological systems. This project is jointly funded by the Frontier Research in Earth Sciences Program in the Division of Earth Sciences and the Evolutionary Processes Cluster in the Division of Environmental Biology.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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ArayaDonoso, Raúl and Biddy, Austin and MunguíaVega, Adrián and LiraNoriega, Andrés and Dolby, Greer A "Habitat quality or quantity? Niche marginality across 21 plants and animals suggests differential responses between highland and lowland species to past climatic changes" Ecography , v.e07391 , 2024 https://doi.org/10.1111/ecog.07391 Citation Details
Davalos-Dehullu, Elizabeth and Baty, Sarah M and Fisher, Robert N and Scott, Peter A and Dolby, Greer A and Munguia-Vega, Adrian and Cortez, Diego "Chromosome-Level Genome Assembly of the Blacktail Brush Lizard, Urosaurus nigricaudus , Reveals Dosage Compensation in an Endemic Lizard" Genome Biology and Evolution , v.15 , 2023 https://doi.org/10.1093/gbe/evad210 Citation Details
Dong, Xiaoli and Stokes, Maya F and Hendry, Andrew P and Larsen, Laurel G and Dolby, Greer A "Geo-evolutionary feedbacks: integrating rapid evolution and landscape change" Trends in Ecology & Evolution , 2024 https://doi.org/10.1016/j.tree.2024.05.008 Citation Details

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