Award Abstract # 2238845
CAREER: Multi-aperture 3D microscopy for cellular-scale measurement over macroscopic volumes

NSF Org: DBI
Division of Biological Infrastructure
Recipient: DUKE UNIVERSITY
Initial Amendment Date: March 14, 2023
Latest Amendment Date: March 14, 2023
Award Number: 2238845
Award Instrument: Continuing Grant
Program Manager: Eric Lyons
erlyons@nsf.gov
 (703)292-0000
DBI
 Division of Biological Infrastructure
BIO
 Directorate for Biological Sciences
Start Date: March 1, 2023
End Date: February 29, 2028 (Estimated)
Total Intended Award Amount: $521,012.00
Total Awarded Amount to Date: $304,443.00
Funds Obligated to Date: FY 2023 = $304,443.00
History of Investigator:
  • Roarke Horstmeyer (Principal Investigator)
    rwh4@duke.edu
Recipient Sponsored Research Office: Duke University
2200 W MAIN ST
DURHAM
NC  US  27705-4640
(919)684-3030
Sponsor Congressional District: 04
Primary Place of Performance: Duke University
2200 W MAIN ST STE 710
DURHAM
NC  US  27708-4677
Primary Place of Performance
Congressional District:
04
Unique Entity Identifier (UEI): TP7EK8DZV6N5
Parent UEI:
NSF Program(s): Innovation: Instrumentation
Primary Program Source: 01002324DB NSF RESEARCH & RELATED ACTIVIT
01002627DB NSF RESEARCH & RELATED ACTIVIT

01002728DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 1045
Program Element Code(s): 165Y00
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

An award is made to Duke University to perform research and create associated educational material surrounding novel digital optical microscopes. This project will specifically develop microscopic imaging technologies that can capture and rapidly process 3D video at high speeds over large volumes. Building upon research within data-driven optimization methods, this project will also create new software to rapidly display 3D videos at high resolution. Educational material in the form of online and hands-on lessons about the operation and application of 3D digital microscopes will be created and disseminated through outreach programs and within curriculum, with the aim of raising the scientific literacy of high-school and undergraduate students.

This project will specifically focus on the development of computational microscopes that are comprised of multi-scale optical arrays. Such systems use a series of micro-cameras to capture dozens of unique perspectives of dynamic specimens of interest across a 1 cm3 volume at cellular-scale resolution. Co-optimized software then fuses the acquired data into composite 3D video frames for subsequent interpretation and analysis. This project aims to showcase its new technology by experimentally monitoring the natural 3D locomotion of model organisms at cellular resolution, while recording whole-brain fluorescence neural activity during such free movement. Such novel capabilities will likely accelerate model organism-based research within the fields of neuroscience, and the mapping of cellular networks within macroscopic cleared tissue volumes.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Cook, Clare and Zhou, Kevin C. and Horstmeyer, Roarke "Fourier Light Field Camera Array Microscope for Mesoscale 3D Imaging" , 2023 https://doi.org/10.1364/3D.2023.DTu2A.4 Citation Details
Zhou, Kevin C. and Harfouche, Mark and Zheng, Maxwell and Jönsson, Joakim and Lee, Kyung Chul and Appel, Ron and Reamey, Paul and Doman, Thomas and Saliu, Veton and Horstmeyer, Gregor and Horstmeyer, Roarke "Computational 3D surface microscopy from terabytes of data with a self-supervised reconstruction algorithm" , 2023 https://doi.org/10.1364/COSI.2023.JM1B.2 Citation Details

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