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Award Abstract # 2238788
CAREER: The genetic and developmental basis of body size evolution in nematodes

NSF Org: IOS
Division Of Integrative Organismal Systems
Recipient: UNIVERSITY OF OKLAHOMA
Initial Amendment Date: March 15, 2023
Latest Amendment Date: May 24, 2024
Award Number: 2238788
Award Instrument: Continuing Grant
Program Manager: Anna Allen
akallen@nsf.gov
 (703)292-8011
IOS
 Division Of Integrative Organismal Systems
BIO
 Directorate for Biological Sciences
Start Date: March 15, 2023
End Date: February 29, 2028 (Estimated)
Total Intended Award Amount: $964,837.00
Total Awarded Amount to Date: $947,837.00
Funds Obligated to Date: FY 2023 = $747,837.00
FY 2024 = $200,000.00
History of Investigator:
  • Gavin Woodruff (Principal Investigator)
    gcwoodruff@ou.edu
Recipient Sponsored Research Office: University of Oklahoma Norman Campus
660 PARRINGTON OVAL RM 301
NORMAN
OK  US  73019-3003
(405)325-4757
Sponsor Congressional District: 04
Primary Place of Performance: University of Oklahoma Norman Campus
1000 ASP AVE RM 105
NORMAN
OK  US  73019-4039
Primary Place of Performance
Congressional District:
04
Unique Entity Identifier (UEI): EVTSTTLCEWS5
Parent UEI:
NSF Program(s): Evolution of Develp Mechanism,
EPSCoR Co-Funding
Primary Program Source: 01002324DB NSF RESEARCH & RELATED ACTIVIT
01002425DB NSF RESEARCH & RELATED ACTIVIT

01002526DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 1045, 5946, 9150, 9177, 9178, 9179
Program Element Code(s): 108000, 915000
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074, 47.083

ABSTRACT

The diversity among animal body sizes (from at least ants to elephants) is immense and demands explanation. Yet, the genetic and developmental changes that cause body size evolution remain unknown. The proposed work aims to address this problem by harnessing both long-established and cutting-edge genetic techniques in closely-related roundworm species with drastically different body sizes to identify the causes of body size variation. This work is important because we know larger roundworm species have larger cells than those of smaller species, and when the processes regulating cell size go awry, diseases such as cancer emerge. This work then has the potential to discover novel genes that control cell size and thus potential novel targets for cancer therapeutics. Beyond this, the research work described above will be integrated with multiple, established educational initiatives in the state of Oklahoma including: 1) The University of Oklahoma?s four-year undergraduate research experience program; 2) A multi-year summer research program for American Indian undergraduates; 3) A research experience for high school students summer program; and 4) A graduate-student led summer coding workshop. Additionally, an undergraduate developmental biology laboratory course will be developed where students will participate in the original research activities described above. The proposed work not only aims to make significant advances in understanding the evolution of body size and the genes underlying cell size variation, but this work also aims to connect multiple educational efforts with these research efforts to simultaneously advance both scientific knowledge and societal good.

Understanding how developmental systems evolve to promote phenotypic diversity is a fundamental goal of biology. These systems include and regulate the morphogenetic fields, signaling factors, and differentiation decisions essential for the construction and ultimate form of a multicellular organism. Despite this, while gene regulatory networks have been painstakingly described in a handful of model systems, network architecture change is rarely connected to morphological divergence among species. How does genetic variation change developmental processes to cause divergent phenotypes? Over forty years of C. elegans genetics has revealed the developmental details of a canonical TGF-? signaling network that regulates body size in this species. C. inopinata is the sister species of C. elegans, and it is nearly twice as long in size as its highly-studied close relative. Here, the vast background knowledge of a long-standing model system will be integrated with a comparative approach to understand how network modification causes phenotypic divergence. This work will include: 1) The perturbation of TGF-? pathway activity in two species to determine how ancestral body size genes evolve to promote cell size divergence; 2) The generation and mapping of large-effect body size mutations in C. inopinata to discover novel genes driving cell size regulation; and 3) The characterization of tissue-specific cell size variation in mutants across development in two species. Not only will this work map genotypes to organismal phenotypes such as body size, but it will also show how genotypes influence cellular phenotypes to cause the emergence of such organismal phenotypes. The research work described above will be integrated with multiple, established educational initiatives in the state of Oklahoma to broaden the participation of students at all levels in scientific research.

This project is jointly funded by the BIO-IOS-Developmental Systems Program and the Established Program to Stimulate Competitive Research (EPSCoR).

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Van Goor, Justin and Kanzaki, Natsumi and Woodruff, Gavin "How to be a fig nematode" Acta Oecologica , v.119 , 2023 https://doi.org/10.1016/j.actao.2023.103916 Citation Details
Woodruff, Gavin C and Moser, Kimberly A "A ubiquinone precursor analogue does not clearly increase the growth rate of Caenorhabditis inopinata" microPublication biology , v.2024 , 2024 https://doi.org/10.17912/micropub.biology.001235 Citation Details
Woodruff, Gavin C and Willis, John H and Johnson, Erik and Phillips, Patrick C "Widespread changes in gene expression accompany body size evolution in nematodes" G3: Genes, Genomes, Genetics , v.14 , 2024 https://doi.org/10.1093/g3journal/jkae110 Citation Details
Woodruff, Gavin C and Willis, John H and Phillips, Patrick C "Patterns of Genomic Diversity in a Fig-Associated Close Relative of Caenorhabditis elegans" Genome Biology and Evolution , v.16 , 2024 https://doi.org/10.1093/gbe/evae020 Citation Details

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