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Award Abstract # 2237512
CAREER: Selective activation of catalytic RNA to control energy flow in microbial consortia

NSF Org: MCB
Division of Molecular and Cellular Biosciences
Recipient: WILLIAM MARSH RICE UNIVERSITY
Initial Amendment Date: January 31, 2023
Latest Amendment Date: January 31, 2023
Award Number: 2237512
Award Instrument: Continuing Grant
Program Manager: Bianca Garner
bgarner@nsf.gov
 (703)292-7587
MCB
 Division of Molecular and Cellular Biosciences
BIO
 Directorate for Biological Sciences
Start Date: April 1, 2023
End Date: March 31, 2028 (Estimated)
Total Intended Award Amount: $649,727.00
Total Awarded Amount to Date: $251,665.00
Funds Obligated to Date: FY 2023 = $251,665.00
History of Investigator:
  • James Chappell (Principal Investigator)
    jc125@rice.edu
Recipient Sponsored Research Office: William Marsh Rice University
6100 MAIN ST
Houston
TX  US  77005-1827
(713)348-4820
Sponsor Congressional District: 09
Primary Place of Performance: William Marsh Rice University
6100 MAIN ST
Houston
TX  US  77005-1827
Primary Place of Performance
Congressional District:
09
Unique Entity Identifier (UEI): K51LECU1G8N3
Parent UEI:
NSF Program(s): Systems and Synthetic Biology
Primary Program Source: 01002324DB NSF RESEARCH & RELATED ACTIVIT
01002627DB NSF RESEARCH & RELATED ACTIVIT

01002728DB NSF RESEARCH & RELATED ACTIVIT

01002526DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 7465, 1045
Program Element Code(s): 801100
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

Microbial communities are found almost everywhere and underlie processes critical to agriculture, waste treatment, the longevity of materials, and human health. Genetic manipulation of these communities can be used to understand how they form and to introduce new functions to increase the agricultural productivity of soil, improve human health, recover energy from waste materials to achieve a circular economy, and more. To that end, this project creates a new method for genetically programming microbial communities that will open the door for new applications in biotechnology and medicine. This project also carries out an integrated research and education plan that focuses on community colleges. While community colleges educate a large and diverse student body, they often lack access to high-impact research experiences. Through a series of research-focused activities, this project aims to increase the number of community college students pursuing degrees and careers in science, technology, engineering, and mathematics (STEM).

In the last decade, great progress has been made in developing frameworks to genetically program model microbes grown in the laboratory. To program the native microbial communities found in soils, rivers, guts, minerals, and built materials, analogous frameworks will be required. This project addresses the broad challenge of genetically engineering microbial communities that are composed of diverse non-model species and often found in complex matrices (e.g., soil, biofilms, materials). Engineered RNA systems will be used to study how different genetic programs spread throughout microbial communities and to implement spatiotemporal control such that genetic programs are only activated in specific community members. These methods will be combined and applied to create genetic programs that enhance the ability of microbial communities to harvest energy directly from waste materials.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Garza Elizondo, Andrea M. and Chappell, James "Targeted Transcriptional Activation Using a CRISPR-Associated Transposon System" ACS Synthetic Biology , v.13 , 2024 https://doi.org/10.1021/acssynbio.3c00563 Citation Details
Kalvapalle, Prashant B and Staubus, August and Dysart, Matthew J and Gambill, Lauren and Reyes_Gamas, Kiara and Lu, Li Chieh and Silberg, Jonathan J and Stadler, Lauren B and Chappell, James "Information storage across a microbial community using universal RNA barcoding" Nature Biotechnology , 2025 https://doi.org/10.1038/s41587-025-02593-0 Citation Details

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