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Award Abstract # 2213103
MPS-Ascend: Liquid-Liquid Phase Separation of Heteropolymers: Sequence Details and Coupling to Statistical Fluctuations

NSF Org: DMR
Division Of Materials Research
Recipient:
Initial Amendment Date: April 11, 2022
Latest Amendment Date: April 11, 2022
Award Number: 2213103
Award Instrument: Fellowship Award
Program Manager: Daryl Hess
dhess@nsf.gov
 (703)292-4942
DMR
 Division Of Materials Research
MPS
 Directorate for Mathematical and Physical Sciences
Start Date: September 1, 2022
End Date: August 31, 2025 (Estimated)
Total Intended Award Amount: $300,000.00
Total Awarded Amount to Date: $300,000.00
Funds Obligated to Date: FY 2022 = $300,000.00
History of Investigator:
  • Michael Phillips (Principal Investigator)
Recipient Sponsored Research Office: Phillips, Michael Robert
Denver
CO  US  80208
Sponsor Congressional District: 01
Primary Place of Performance: University of Denver
Denver
CO  US  80208-0002
Primary Place of Performance
Congressional District:
01
Unique Entity Identifier (UEI):
Parent UEI:
NSF Program(s): ASCEND - MPS
Primary Program Source: 010V2122DB R&RA ARP Act DEFC V
Program Reference Code(s): 102Z, 7573
Program Element Code(s): 187Y00
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.049

ABSTRACT

This award is funded in whole or in part under the American Rescue Plan Act of 2021 (Public Law 117-2). Dr. Michael Phillips is awarded a NSF Mathematical and Physical Sciences Ascending Postdoctoral Research Fellowship (NSF MPS-Ascend) to conduct a program of research and activities related to broaden participation by groups underrepresented in STEM. This fellowship to Dr. Phillips supports his research entitled ?MPS-Ascend: Liquid-Liquid Phase Separation of Heteropolymers: Sequence Details and Coupling to Statistical Fluctuations?, under the mentorship of sponsoring senior scientists. The host institution for the fellowship is University of Denver, and the sponsoring scientist is Dr. Kingshuk Ghosh.

Theoretical techniques will be applied to predict the behavior of large, long-chain like molecules in solution with an aim to better understand how living cells work. This work extends previous models and applies them to phenomena like liquid-liquid phase separation (LLPS) where polymer solutions separate into high- and low-density regions. The hypothesis is that this process is important to reducing noise in the chemical circuitry that extracts information from DNA. The complex theoretical tools developed will help streamline the design of new synthetic polymers, and advance understanding of fundamental questions about physical and chemical processes in living cells and evolution. Alongside research activities, this project promotes education and diversity in STEM fields. Students from diverse backgrounds are engaged directly at the college and university levels by informational events. Those materials and methods are shared freely with K-12 educators. Students explore topics across scientific fields by working on introductory projects led by experienced researchers. Video games, music, programming, machine learning, and other tools are incorporated into the projects. Select students are offered stipends to support the time and effort spent on projects. This project advances scientific progress across several different fields. Further, a new approach to public engagement is pioneered to improve scientific understanding in the local community. In these ways, the health, prosperity, and welfare of the United States is strongly promoted.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Houston, Lilianna and Phillips, Michael and Torres, Andrew and Gaalswyk, Kari and Ghosh, Kingshuk "Physics-Based Machine Learning Trains Hamiltonians and Decodes the Sequence-Conformation Relation in the Disordered Proteome" Journal of Chemical Theory and Computation , v.20 , 2024 https://doi.org/10.1021/acs.jctc.4c01114 Citation Details
Phillips, Michael and Muthukumar, Murugappan and Ghosh, Kingshuk and Bahar, ed., Ivet "Beyond monopole electrostatics in regulating conformations of intrinsically disordered proteins" PNAS Nexus , v.3 , 2024 https://doi.org/10.1093/pnasnexus/pgae367 Citation Details
Torres, Andrew and Cockerell, Spencer and Phillips, Michael and Balázsi, Gábor and Ghosh, Kingshuk "MaxCal can infer models from coupled stochastic trajectories of gene expression and cell division" Biophysical Journal , 2023 https://doi.org/10.1016/j.bpj.2023.05.017 Citation Details
Valverde, Juan Manuel and Dubra, Geronimo and Phillips, Michael and Haider, Austin and Elena-Real, Carlos and Fournet, Aurélie and Alghoul, Emile and Chahar, Dhanvantri and Andrés-Sanchez, Nuria and Paloni, Matteo and Bernadó, Pau and van_Mierlo, Guido an "A cyclin-dependent kinase-mediated phosphorylation switch of disordered protein condensation" Nature Communications , v.14 , 2023 https://doi.org/10.1038/s41467-023-42049-0 Citation Details

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