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Award Abstract # 2205418
Collaborative Research: SCH: Geometry and Topology for Interpretable and Reliable Deep Learning in Medical Imaging

NSF Org: IIS
Division of Information & Intelligent Systems
Recipient: UNIVERSITY OF UTAH
Initial Amendment Date: August 19, 2022
Latest Amendment Date: August 19, 2022
Award Number: 2205418
Award Instrument: Standard Grant
Program Manager: Sylvia Spengler
sspengle@nsf.gov
 (703)292-7347
IIS
 Division of Information & Intelligent Systems
CSE
 Directorate for Computer and Information Science and Engineering
Start Date: September 1, 2022
End Date: August 31, 2026 (Estimated)
Total Intended Award Amount: $570,102.00
Total Awarded Amount to Date: $570,102.00
Funds Obligated to Date: FY 2022 = $570,102.00
History of Investigator:
  • Bei Phillips (Principal Investigator)
    beiwang@sci.utah.edu
Recipient Sponsored Research Office: University of Utah
201 PRESIDENTS CIR
SALT LAKE CITY
UT  US  84112-9049
(801)581-6903
Sponsor Congressional District: 01
Primary Place of Performance: University of Utah
75 S 2000 E
SALT LAKE CITY
UT  US  84112-8930
Primary Place of Performance
Congressional District:
01
Unique Entity Identifier (UEI): LL8GLEVH6MG3
Parent UEI:
NSF Program(s): Smart and Connected Health
Primary Program Source: 01002223DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 8018
Program Element Code(s): 801800
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.070

ABSTRACT

Deep learning models are being developed for safety-critical applications, such as health care, autonomous vehicles, and security. Their impressive performance has the potential to make profound impacts on human lives. For example, deep neural networks (DNNs) in medical imaging have been shown to have impressive diagnostic capabilities, often near that of expert radiologists. However, deep learning has not made it into standard clinical care, primarily due to a lack of understanding of why a model works and why it fails. The goal of this project is to develop methods for making machine learning models interpretable and reliable, and thus bridge the trust gap to make machine learning translatable to the clinic. This project achieves this goal through investigation of the mathematical foundations -- specifically the geometry and topology -- of DNNs. Based on these mathematical foundations, this project will develop computational tools that will improve the interpretability and reliability of DNNs. The methods developed in this project will be broadly applicable wherever deep learning is used, including health care, security, computer vision, natural language processing, etc.

The power of a deep neural network lies in its hidden layers, where the network learns internal representations of input data. This research project centers around the hypothesis that geometry and topology provide critical tools for analyzing the internal representations of DNNs. The first goal of this project is to develop a rigorous mathematical and algorithmic foundation for describing the geometry and topology of a neural network's internal representations and then design efficient algorithms for geometric and topological computations necessary to explore these spaces. The next aim of this project is to apply these tools to improve the interpretability of deep learning. This will be done by linking a model's internal representation with interpretable and trusted features and by interactive visualization that explores the landscape of a model's internal representation. The next goal of this project focuses on model reliability, where geometry and topology will be used for failure identification, mitigation, and prevention. Finally, this project will test the developed techniques for reliable and interpretable neural networks in a real-world setting to aid expert oncologists in predicting patient outcomes in head and neck cancers, e.g., whether a tumor will metastasize.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Arzani, Amirhossein and Yuan, Lingxiao and Newell, Pania and Wang, Bei "Interpreting and generalizing deep learning in physics-based problems with functional linear models" Engineering with Computers , 2024 https://doi.org/10.1007/s00366-024-01987-z Citation Details
Purvine, Emilie and Brown, Davis and Jefferson, Brett and Joslyn, Cliff and Praggastis, Brenda and Rathore, Archit and Shapiro, Madelyn and Wang, Bei and Zhou, Youjia "Experimental Observations of the Topology of Convolutional Neural Network Activations" Proceedings of the AAAI Conference on Artificial Intelligence , v.37 , 2023 https://doi.org/10.1609/aaai.v37i8.26134 Citation Details
Rathore, Archit and Dev, Sunipa and Phillips, Jeff M. and Srikumar, Vivek and Zheng, Yan and Yeh, Chin-Chia Michael and Wang, Junpeng and Zhang, Wei and Wang, Bei "VERB: Visualizing and Interpreting Bias Mitigation Techniques Geometrically for Word Representations" ACM Transactions on Interactive Intelligent Systems , 2023 https://doi.org/10.1145/3604433 Citation Details
Rathore, Archit and Zhou, Yichu and Srikumar, Vivek and Wang, Bei "TopoBERT: Exploring the topology of fine-tuned word representations" Information Visualization , v.22 , 2023 https://doi.org/10.1177/14738716231168671 Citation Details
Zhou, Youjia and Jenne, Helen and Brown, Davis and Shapiro, Madelyn and Jefferson, Brett and Joslyn, Cliff and Henselman-Petrusek, Gregory and Praggastis, Brenda and Purvine, Emilie and Wang, Bei "Comparing Mapper Graphs of Artificial Neuron Activations" , 2023 https://doi.org/10.1109/TopoInVis60193.2023.00011 Citation Details
Zhou, Youjia and Zhou, Yi and Ding, Jie and Wang, Bei. "Visualizing and Analyzing the Topology of Neuron Activations in Deep Adversarial Training." Proceedings of the Topology, Algebra, and Geometry in Machine Learning (TAGML) Workshop at ICML , 2023 Citation Details

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