Award Abstract # 2137375
Collaborative Research: Role of Nutrient Limitation and Viral Interactions on Antarctic Microbial Community Assembly: A Cryoconite Microcosm Study

NSF Org: OPP
Office of Polar Programs (OPP)
Recipient: THE REGENTS OF THE UNIVERSITY OF COLORADO
Initial Amendment Date: April 27, 2022
Latest Amendment Date: April 27, 2022
Award Number: 2137375
Award Instrument: Standard Grant
Program Manager: Rebecca Gast
rgast@nsf.gov
 (703)292-2356
OPP
 Office of Polar Programs (OPP)
GEO
 Directorate for Geosciences
Start Date: May 1, 2022
End Date: April 30, 2026 (Estimated)
Total Intended Award Amount: $181,600.00
Total Awarded Amount to Date: $181,600.00
Funds Obligated to Date: FY 2022 = $181,600.00
History of Investigator:
  • Steven Schmidt (Principal Investigator)
    steve.schmidt@colorado.edu
  • Sarah Holbrooke (Co-Principal Investigator)
Recipient Sponsored Research Office: University of Colorado at Boulder
3100 MARINE ST
Boulder
CO  US  80309-0001
(303)492-6221
Sponsor Congressional District: 02
Primary Place of Performance: University of Colorado at Boulder
3100 Marine Street, Room 481
Boulder
CO  US  80303-1058
Primary Place of Performance
Congressional District:
02
Unique Entity Identifier (UEI): SPVKK1RC2MZ3
Parent UEI:
NSF Program(s): ANT Organisms & Ecosystems
Primary Program Source: 0100CYXXDB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 5294, 9102, 9178, 9179
Program Element Code(s): 511100
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.078

ABSTRACT

Cryoconite holes are sediment-filled melt holes in the surface of glaciers that can be important sites of active microbial life in an otherwise mostly frozen and barren landscape. Previous studies in the McMurdo Dry Valleys, Antarctica suggest that viral infections of microbes, and a general lack of fertilizers (i.e., nutrients), may be important factors shaping the development and functioning of microbial communities in cryoconite holes. The researchers propose an experimental approach to understand how nutrient limitation affects diversity (number of species) and overall abundance of microbes, and how the diversity and abundance of microbes in turn affects the diversity, abundance, and infection type of viruses that parasitize the microbes in cryoconite sediments. The researchers will use sediments previously collected from Antarctic glaciers that have varying concentrations of viruses and nutrients, to set up a nutrient-addition experiment to determine how nutrients affect microbial and viral population dynamics. The results will deepen our understanding of how microbial communities in general are shaped by nutrients and viruses and give new insights into the functioning of viruses in extremely cold environments. The researchers will publish their findings in scientific journals and will share their discoveries with K-12 students from rural schools in collaboration with the Pinhead Institute and will connect undergraduate students from under-represented minorities to polar research through participation in the university?s Science, Technology, Engineering & Mathematics Routes Uplift Research Program. Outreach will be achieved through videos produced and distributed by a professional science communicator. The research advances a National Science Foundation goal of expanding fundamental knowledge of Antarctic systems, biota, and processes by utilizing the unique characteristics of the Antarctic region as a science observing platform.

The Principal Investigators propose an experimental approach to understand how nutrient limitation affects microbial diversity and abundances and their cascading effects on virus diversity, abundance, and mode of infection (lysis vs. lysogeny) in Antarctic cryoconite holes. Cryoconite holes are ideal natural microcosms for manipulative studies, not available in other cryospheric ecosystems. The PIs will use previously collected cryoconite from across a gradient of both viral diversity and nutrient levels to address questions about key limiting nutrients and microbial-viral community dynamics in cryoconite sediments. Nutrient manipulation experiments will be conducted in a growth chamber that closely approximates the light and temperature regime of in situ cryoconite holes to test three core hypotheses: (1) phosphorus availability limits microbial productivity and abundance in cryoconite holes; (2) relaxing nutrient limitation in cryoconite from low-diversity glaciers will increase species diversity, leading microbial communities to resemble those found on more nutrient-rich glaciers; (3) relaxing nutrient limitation will increase the diversity and abundance of viruses by increasing the availability of suitable hosts, and decrease the prevalence of lysogenic infections. By manipulating nutrient limitation within a realistic range, this project will help verify hypothesized phosphorus limitation of Antarctic cryoconite holes and will extend understanding of the connections between nutrients, diversity, and viral infection dynamics in the cryosphere more generally. A better understanding of these dynamics in cryoconite sediments improves the ability of scientists to forecast future impacts of environmental changes in the cryosphere.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Bueno_de_Mesquita, Clifton P and Vimercati, Lara and Wu, Dongying and Childress, Mary K and Danz, August and Grupe, Arthur C and Haelewaters, Danny and Hyde, Natalie M and Kossmann, Thiago and Oliver, Charles and Perrotta, Candice and Young, Benjamin D an "Fungal diversity and function in metagenomes sequenced from extreme environments" Fungal Ecology , v.72 , 2024 https://doi.org/10.1016/j.funeco.2024.101383 Citation Details
Lyu, Zhou and Sommers, Pacifica and Schmidt, Steven K and Magnani, Marta and Cimpoiasu, Mihai and Kuras, Oliver and Zhuang, Qianlai and Oh, Youmi and De_La_Fuente, Maria and Cramm, Margaret and Bradley, James A "Seasonal dynamics of Arctic soils: Capturing year-round processes in measurements and soil biogeochemical models" Earth-Science Reviews , v.254 , 2024 https://doi.org/10.1016/j.earscirev.2024.104820 Citation Details
Schmidt, SK and Vimercati, L and Solon, AJ and Robinson, JN and Bueno_de_Mesquita, CP and Johnson, BW "Evidence for rapid ecosystem retrogression along a post-glacial chronosequence in Antarctica" Polar Biology , v.47 , 2024 https://doi.org/10.1007/s00300-024-03279-0 Citation Details

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