Award Abstract # 2123465
Synthetic P-bodies: Coupling gene expression and ribonucleoprotein granules in synthetic cell vesicles for sensing and response

NSF Org: MCB
Division of Molecular and Cellular Biosciences
Recipient: UNIVERSITY OF NEW MEXICO
Initial Amendment Date: July 20, 2021
Latest Amendment Date: July 20, 2021
Award Number: 2123465
Award Instrument: Standard Grant
Program Manager: Anthony Garza
aggarza@nsf.gov
 (703)292-2489
MCB
 Division of Molecular and Cellular Biosciences
BIO
 Directorate for Biological Sciences
Start Date: August 1, 2021
End Date: July 31, 2025 (Estimated)
Total Intended Award Amount: $992,280.00
Total Awarded Amount to Date: $992,280.00
Funds Obligated to Date: FY 2021 = $992,280.00
History of Investigator:
  • Gabriel Lopez (Principal Investigator)
    gplopez@unm.edu
  • William Gannon (Co-Principal Investigator)
  • Matthew Lakin (Co-Principal Investigator)
  • Kate Adamala (Co-Principal Investigator)
Recipient Sponsored Research Office: University of New Mexico
1 UNIVERSITY OF NEW MEXICO
ALBUQUERQUE
NM  US  87131-0001
(505)277-4186
Sponsor Congressional District: 01
Primary Place of Performance: University of New Mexico
1700 Lomas Blvd. NE, Suite 2200
Albuquerque
NM  US  87131-0001
Primary Place of Performance
Congressional District:
01
Unique Entity Identifier (UEI): F6XLTRUQJEN4
Parent UEI:
NSF Program(s): Systems and Synthetic Biology
Primary Program Source: 01002122DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 1228, 7465, 9150, 9177, 9178, 9179
Program Element Code(s): 801100
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

Synthetic biologists are embarking on efforts to build synthetic cells with specific functions and desired applications such as the ability to eradicate infection-causing microbes or the ability to breakdown toxic chemicals in the environment. One basic function these synthetic cells will need is the ability to actively sense and respond to the external environment. The goal of this project is to test a synthetic compartmentalization system known as programmable bodies or P-bodies, which is designed to provide synthetic cells with the ability to sense and respond to environmental cues. In addition to the development of synthetic P-bodies, this project will allow an interdisciplinary team to train graduate and undergraduate students, to expand the intellectual and professional networks available to participants, and to design and deliver a learning module on ?synthetic life ethics.?

This project integrates advances in bottom-up synthetic biology and engineering of liquid-liquid phase separation of intrinsically disordered proteins, nucleic-acid binding proteins, and nucleic acids. Specifically, the goal is to develop a versatile synthetic cell platform that integrates intracellular synthetic P-bodies which dynamically respond to, and regulate, gene expression in manners analogous to natural membraneless organelles. These bodies comprise phase-separated nucleic acids and engineered fusions of intrinsically disordered proteins and ribonucleoproteins. Their dynamic and reversible formation and dissolution is mediated by chemically induced gene expression to enable chemical sensing. Molecular-level response is likewise enabled by the triggered formation and dissolution of the synthetic P-bodies to sequester or release molecular cargo. The project integrates synthetic cells into functional hybrid materials systems for the specific application of controlling formation of bacterial biofilms.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Díez_Pérez, Telmo and Tafoya, Ashley N and Peabody, David S and Lakin, Matthew R and Hurwitz, Ivy and Carroll, Nick J and López, Gabriel P "Isolation of nucleic acids using liquidliquid phase separation of pH-sensitive elastin-like polypeptides" Scientific Reports , v.14 , 2024 https://doi.org/10.1038/s41598-024-60648-9 Citation Details
López, Gabriel P and Gannon, William L "Developing a Graduate Class on Synthetic Cells at a Minority Serving Institution: Lessons from the University of New Mexico" ACS Synthetic Biology , v.12 , 2023 https://doi.org/10.1021/acssynbio.3c00275 Citation Details

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