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Award Abstract # 2003889
Molecular rotors for studying transition state stabilization by non-covalent interactions

NSF Org: CHE
Division Of Chemistry
Recipient: UNIVERSITY OF SOUTH CAROLINA
Initial Amendment Date: April 30, 2020
Latest Amendment Date: April 30, 2020
Award Number: 2003889
Award Instrument: Standard Grant
Program Manager: Suk-Wah Tam-Chang
stamchan@nsf.gov
 (703)292-8684
CHE
 Division Of Chemistry
MPS
 Directorate for Mathematical and Physical Sciences
Start Date: August 1, 2020
End Date: January 31, 2024 (Estimated)
Total Intended Award Amount: $447,500.00
Total Awarded Amount to Date: $447,500.00
Funds Obligated to Date: FY 2020 = $447,500.00
History of Investigator:
  • Ken Shimizu (Principal Investigator)
    shimizu@mail.chem.sc.edu
Recipient Sponsored Research Office: University of South Carolina at Columbia
1600 HAMPTON ST
COLUMBIA
SC  US  29208-3403
(803)777-7093
Sponsor Congressional District: 06
Primary Place of Performance: University of South Carolina at Columbia
University of SC at Columbia
Columbia
SC  US  29208-3406
Primary Place of Performance
Congressional District:
06
Unique Entity Identifier (UEI): J22LNTMEDP73
Parent UEI: Q93ZDA59ZAR5
NSF Program(s): Macromolec/Supramolec/Nano
Primary Program Source: 01002021DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 9150, 9263
Program Element Code(s): 688500
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.049

ABSTRACT

Professor Ken D. Shimizu of the University of South Carolina is supported by the Macromolecular, Supramolecular, and Nanochemistry Program in the Division of Chemistry to investigate the role of non-bonding interactions in the stabilization of the transition state between reactants and products. Catalysts are frequently used to speed up chemical reactions and make them more selective for the desired product. A key challenge in catalysis development is enhancing the ability of catalysts to bring together molecules into crowded reactive structures know as transitions states. Professor Shimizu and his students are constructing molecular machines (rotors) that assist in the fundamental understanding and optimization of catalyst reactivity. The molecular rotors are designed to assess factors that simplify the formation of these crowded reactive structures via changes in the speed of their rotation. Thus, the molecular rotors provide a simple and systemic way to study and improve catalyst design. The development of new and improved catalysts enables the efficient production of new chemicals, polymers, fuels, and pharmaceuticals. Graduate and undergraduate students are trained in research methods, in particular women chemists through a collaboration with faculty and students at a local women?s college. A graduate course is developed to provide students with fundamental skills, such as how to present seminars, time and research management strategies, and how to write research publications and proposals.

The ability of non-covalent interactions to stabilize transition states is measured using a series of molecular rotors. The rotors form non-covalent interactions in their planar transition states. The stabilizing effects of the non-covalent interactions can be measured from the increase in speed of the molecular rotors. The versatility and modularity of the rotor framework enables the study of a wide range of non-covalent interactions including hydrogen bonds, cation-pi, anion-pi, n-pi*, chalcogen-chalcogen, CH-pi, arene-arene, OH-pi, and metal-pi interactions. The transition state effects are easily and accurately assessed by measuring the rotational barriers using dynamic NMR spectroscopy. Finally, the rigid framework limits the degrees of freedom in the ground and transition states enabling accurate modeling and simulation using standard DFT methods, which provide computational-corroboration of the experimentally measured barriers, transition state structures, and insights into the origins of the stabilizing effects. The project broadly impacts the development of new strategies to improve synthetic catalysts and provides insights into the large rate accelerations in enzymatic systems. In addition, the development of a new strategy for studying and interrogating transition state energies using molecular rotors provides chemists with new tools for fundamental kinetic studies.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Lin, Binzhou and Karki, Ishwor and Pellechia, Perry J. and Shimizu, Ken D. "Electrostatically-gated molecular rotors" Chemical Communications , v.58 , 2022 https://doi.org/10.1039/d2cc00512c Citation Details
Lin, Binzhou and Liu, Hao and Karki, Ishwor and Vik, Erik C. and Smith, Mark D. and Pellechia, Perry J. and Shimizu, Ken D. "Pnictogen Interactions with Nitrogen Acceptors" Angewandte Chemie International Edition , v.62 , 2023 https://doi.org/10.1002/anie.202304960 Citation Details
Li, Ping and Vik, Erik C. and Shimizu, Ken D. "N -Arylimide Molecular Balances: A Comprehensive Platform for Studying Aromatic Interactions in Solution" Accounts of Chemical Research , v.53 , 2020 https://doi.org/10.1021/acs.accounts.0c00519 Citation Details
Manzewitsch, Alexander_N and Liu, Hao and Lin, Binzhou and Li, Ping and Pellechia, Perry_J and Shimizu, Ken_D "Empirical Model of Solvophobic Interactions in Organic Solvents" Angewandte Chemie International Edition , v.63 , 2023 https://doi.org/10.1002/anie.202314962 Citation Details

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

The goal of this project was to study the weak attractive forces between molecules. These weak forces are called non-covalent interactions (NCIs). NCIs are responsible for holding molecules together in solids and directing drugs to their biological targets. We were specifically interested in how NCIs can catalyze chemical reactions and help chemical reactions happen more easily. This could provide insight into how biological catalysts function or provide new synthetic catalysts to build pharmaceuticals and materials. A novel aspect of our study was to design molecular devices to measure the non-covalent interactions. The molecular rotors are on the same size scale, making it easier to see and measure the weak attractive forces between molecules. The NCIs make the rotors spin faster and the rate of spinning provides a direct measure of the attractive force. The molecular devices are also very versatile. The interacting surfaces could be easily varied allowing the study of many types of NCIs involving hydrogen, nitrogen, oxygen, sulfur, silicon, and carbon atoms. Many interactions are relatively new; thus, our studies were among the first experimental measurements. The ability to measure and study various types of NCIs using a common molecular framework allowed direct comparison of their relative strengths and structural trends. Insight into the origins of these interactions was provided by computational modeling, leading to the development of predictive models. 

The study of non-covalent interactions has broader implications for fields such as drug design, where understanding these interactions can lead to the development of more effective pharmaceuticals. Additionally, this research can impact materials science by contributing to the creation of novel materials with tailored properties. By advancing scientific understanding and emphasizing education and outreach, our project contributes to training the next generation of researchers. The project provided training and professional development for graduate, undergraduate, and high school students. Students learned how to design and synthesize molecules, make measurements, and computationally model the results. The PI developed modules for “Chemistry Camp”, which are seminars and activities targeted to equip graduate students with practical skills, including seminar presentation, common research methods, proposal preparation, and job search techniques.  Finally, collaboration with a female faculty member at a local PUI facilitates research training for undergraduate women chemists. This promotes diversity and empowers the next generation of scientists.

 


Last Modified: 05/30/2024
Modified by: Ken D Shimizu

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