Award Abstract # 1948720
Collaborative Research: In Situ Oxidation Rates of Methane Injected from Seafloor Gas Seeps

NSF Org: OCE
Division Of Ocean Sciences
Recipient: UNIVERSITY OF TENNESSEE
Initial Amendment Date: January 23, 2020
Latest Amendment Date: November 15, 2023
Award Number: 1948720
Award Instrument: Standard Grant
Program Manager: Henrietta Edmonds
hedmonds@nsf.gov
 (703)292-7427
OCE
 Division Of Ocean Sciences
GEO
 Directorate for Geosciences
Start Date: February 1, 2020
End Date: July 31, 2024 (Estimated)
Total Intended Award Amount: $321,219.00
Total Awarded Amount to Date: $482,284.00
Funds Obligated to Date: FY 2020 = $321,219.00
FY 2023 = $108,139.00

FY 2024 = $52,926.00
History of Investigator:
  • Karen Lloyd (Principal Investigator)
    lloydk@usc.edu
Recipient Sponsored Research Office: University of Tennessee Knoxville
201 ANDY HOLT TOWER
KNOXVILLE
TN  US  37996-0001
(865)974-3466
Sponsor Congressional District: 02
Primary Place of Performance: University of Tennessee Knoxville
TN  US  37996-0003
Primary Place of Performance
Congressional District:
02
Unique Entity Identifier (UEI): FN2YCS2YAUW3
Parent UEI: LXG4F9K8YZK5
NSF Program(s): BIOLOGICAL OCEANOGRAPHY,
Chemical Oceanography,
SHIP OPERATIONS
Primary Program Source: 01002324DB NSF RESEARCH & RELATED ACTIVIT
01002425DB NSF RESEARCH & RELATED ACTIVIT

01002021DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 097Z, 1670, 4444, 8242
Program Element Code(s): 165000, 167000, 541100
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.050

ABSTRACT

Thousands of natural gas seeps have been discovered as streams of bubbles rising up from the seafloor just offshore from coastlines around the world. Extensive fields of seeps, largely releasing the same methane gas that we use to heat our homes, have recently been found about a hundred miles east of North Carolina?s Cape Hatteras at water depths as shallow as 300 feet. It is estimated that at least tens of thousands of these hydrocarbon-rich seeps occur on continental margins around the world. The seeps, usually seen as large rising plumes by sonar systems on research ships, inject huge, but poorly quantified, amounts of methane into overlying waters as they rise through the water column. A primary question is how much of the methane, a potent greenhouse gas, actually reaches the atmosphere. This question is the subject of much current research funded by several Federal research agencies including the National Science Foundation and the Department of Energy. Oceanographers believe that the methane (and other gases included in the bubble streams such as ethane and propane) are either transported away by ocean currents or consumed by microorganisms specially adapted to live with hydrocarbons as their main carbon source. This proposal seeks to determine the importance of microbial consumption in controlling methane distributions in the deep ocean and how the consumption rates depend on concentrations of methane, oxygen and other chemicals, as well as in situ pressures and temperatures. Previous studies in laboratories aboard research ship using samples returned to the surface suggest that microbial consumption of methane from the seeps may lag for a week after its injection into the water column and thus that physical dispersion by currents may dominate deepwater methane dynamics through dilution. However, other measurements suggest that there is no lag before aggressive microbial oxidation of injected methane begins. We have proposed to conduct in situ measurements of microbial methane consumption and related microbial community structure in bottom waters at several coastal and continental margin sites off the North Carolina coast and the northern Gulf of Mexico, where numerous natural seeps have also been observed. We will use new technologies developed after the release of massive quantities of methane during the Deepwater Horizon disaster in the Gulf. The sites offer varying concentrations of methane and other chemical and physical conditions such as oxygen concentrations and temperature that will allow us to test specific hypotheses about the role of microbial processes. Through performing the experiments with instruments right on the seafloor next to the seeps we can remove much of the uncertainty surrounding previous shipboard measurements. We will use newly developed seafloor landers equipped with advanced laser methane sensors that are capable of multi-week measurements while assaying dissolved oxygen, dissolved inorganic nitrogen and the microbial community for the presence of methane-consuming methanotrophs and their activity using advanced genomics techniques that can reveal the nature of methanotrophic responses to ambient methane concentrations. Successful collection of in situ methane consumption rate data and associated microbial community changes should prove important for modeling ocean methane dynamics over a range of oceanographic conditions including seep-enriched bottom waters and bottom waters impacted by accidental hydrocarbon releases.

Graduate and undergraduate students supported by the project will gain critical skills in laboratory and field settings and will also benefit from frequent interactions with established researchers from diverse fields. Team members will participate in hands-on undergraduate education and training through developing individualized research projects leading to honors theses, presentations at national meetings and excellent graduate school placements. Graduate and undergraduates will also participate in K-12 science outreach efforts that help to attract and inform the next generation of oceanographers. The team will work with the University of North Carolina Morehead Planetarium and Science Center and participate directly in the North Carolina Science Festival. Through media contacts made from TED talks, exciting results will be broadly disseminated to the public. The project will have immediate relevance for understanding microbially mediated responses to hydrocarbon inputs from accidental releases along the Southeast Atlantic margin where oil and gas exploration are a constant topic of state and national policy discussions.



Hundreds of recently discovered gas seeps along the continental margin offshore of Cape Hatteras, North Carolina plus thousands in the northern Gulf of Mexico, inject huge amounts of dissolved methane into overlying shelf and slope waters through dissolution of rising bubble plumes. The fate of the methane is largely controlled by a balance between microbial oxidation and advective transport away from seep sources. The efficacy of microbial oxidation likely depends on concentrations of methane, oxygen and ambient dissolved inorganic nitrogen (DIN), as well as in situ pressures and temperatures. Recent shipboard aerobic methane oxidation rate (AMOR) measurements suggest that microbial consumption of seep methane may lag for a week and thus physical dispersion could dominate deepwater methane dynamics through dilution. However, methane stable carbon isotopic measurements in bottom waters suggest that there is no lag before aggressive oxidation of injected methane begins. We propose to conduct in situ measurements of AMOR while simultaneously investigating its microbial drivers at representative North Carolina and Gulf of Mexico continental margin sites featuring numerous active bubble seeps. These sites offer varying concentrations of methane and DIN; performing the experiments in situ will remove much of the uncertainty of shipboard rates. We will conduct the measurements utilizing newly developed benthic lander systems equipped with advanced laser methane sensors that are capable of multi-week AMOR measurements while assaying dissolved oxygen, DIN and the microbial community for the presence of methanotrophs (through metagenomes) and their activity (through metatranscriptomes) that can reveal the nature of methanotrophic responses to ambient methane concentrations.

The project will test key hypotheses about deep-sea methane dynamics including determining if there are significant lags in microbial responses after exposure to elevated methane concentrations, determining the relationships of AMOR to methane and DIN concentrations and investigating the response times and magnitude of methanotrophs to spatial and temporal variability in methane concentration. Successful collection of in situ AMOR and associated microbial community data will prove important for modeling ocean methane dynamics over a range of oceanographic conditions including seep-enriched bottom waters and accidental hydrocarbon releases.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Coon, Gage R. and Duesing, Paul D. and Paul, Raegan and Baily, Jennifer A. and Lloyd, Karen G. "Biological methane production and accumulation under sulfate-rich conditions at Cape Lookout Bight, NC" Frontiers in Microbiology , v.14 , 2023 https://doi.org/10.3389/fmicb.2023.1268361 Citation Details
Coon, Gage R and Williams, Leketha C and Matthews, Adrianna and Diaz, Roberto and Kevorkian, Richard T and LaRowe, Douglas E and Steen, Andrew D and Lapham, Laura L and Lloyd, Karen G "Control of hydrogen concentrations by microbial sulfate reduction in two contrasting anoxic coastal sediments" Frontiers in Microbiology , v.15 , 2024 https://doi.org/10.3389/fmicb.2024.1455857 Citation Details
Hudspeth, Zachary W and Morningstar, Joshua L and Mendlovitz, Howard P and Baily, Jennifer A and Lloyd, Karen G and Martens, Christopher S "In situ aerobic methane oxidation rates in a stratified lake" Limnology and Oceanography , 2024 https://doi.org/10.1002/lno.12583 Citation Details
Kevorkian, Richard T. and Sipes, Katie and Winstead, Rachel and Paul, Raegan and Lloyd, Karen G. "Cryptic Methane-Cycling by Methanogens During Multi-Year Incubation of Estuarine Sediment" Frontiers in Microbiology , v.13 , 2022 https://doi.org/10.3389/fmicb.2022.847563 Citation Details
Lloyd, Karen G "Time as a microbial resource" Environmental Microbiology Reports , v.13 , 2021 https://doi.org/10.1111/1758-2229.12892 Citation Details

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

The primary goal of the research is to investigate biogeochemical processes controlling microbial aerobic methane oxidation rates (AMOR) in bottom waters surrounding gas seep sites in the deep ocean. In this project, we have been able to answer key questions about deep-sea methane dynamics by using novel in situ methods to investigate AMOR and the microbial communities that mediate it.

 

Intellectual merit: The delays in ship-time due to covid-19 mean that we did the first part of this project in a freshwater lake to demonstrate the principle that in situ incubations of aerobic methane oxidation can be linked to changes in the microbial community. Experiments were run in Jordan Lake from March 2020 through October 2021 to develop and test an in situ closed loop system capable of continuous monitoring of oxygen and methane concentrations while maintaining pressure and temperature. We demonstrated methane consumption at different temperatures as well as methane, oxygen, dissolved inorganic nitrogen (DIN), and organic matter concentrations. We found that the relative quantities of methanotrophs (which oxidize only methane) and methylotrophs (which demethylate organic matter) were consistent between replicates, but otherwise did not follow any patterns with respect to temperature, oxygen, or nitrogen concentrations. Methanotrophs had a robust  negative correlation with oxygen concentrations. Microaerophilic activity has often been observed in methanotrophs, but it is usually assumed to be an adaptation for getting closer to high methane, which is biologically produced in anoxic conditions. However, our results show this is not the case. The relative abundance of methanotrophs correlates tightly with oxygen, but not methane concentrations, suggesting that oxygen aversion is the primary motivator for microaerophily during aerobic methane oxidation. We gained robust evidence that methanotrophs are responsible for the observed AMOR because the rate constants of methanotrophy correlated positively with the relative abundance of methanotrophs. This was not true of methylotrophs or any other microbial group in these natural communities. This demonstrates the observed variation in AMOR between different experiments is driven by the density of methanotrophs, which are in turn determined by an aversion to oxygen. Our work implies that the amount of methanotrophs, rather than temperature or methane concentration is the primary determinant of the ability of the natural community to absorb shifting methane concentrations. It also suggests that oxygen aversion by methanotrophs may be the ultimate determinant of where they are found.

We completed three cruises to the T1 seep field site, ~350 samples were taken from the water column, sediment, and in situ incubations for microbiological analysis. 16SrRNA gene amplicon analysis has been performed on the water column and in situ incubation samples from the R/V Sharp and R/V Savannah cruises have revealed the presence of Methylomonadaceae (aerobic methanotrophs),Methylophilaceae (nonmethanotrophic methylotrophs), and Nitrosopumilaceae (ammonia-oxidizing archaea), among others. The methane-oxidizing community has low diversity, with the uncultured genus Milano-WF1B-03 being essentially the only aerobic methanotroph present. The relative abundances of Methylomonadaceae and Methylophilaceae exhibit a strong positive correlation across most depths which suggests possible syntrophy between aerobic methanotrophs and nonmethanotrophic methylotrophs in natural deep-sea waters. Further, depth appears to be an important driver of overall community diversity, with the beta diversity of water column samples aligning following a neat gradient across depth.

In summary, we have made the first in situ rate measurements for methane oxidation. They are robust and repeatable in both a freshwater lake and in the deep-sea water column over methane seeps off the coast of Delaware. We have now found strong correlations between geochemical parameters and the natural community that suggest what limits methanotrophy in the open ocean. Our work alsosuggests tight syntrophy between methanotrophs and methylotrophs may help alleviate oxygen toxicity in the open ocean. This work has supported five peer-reviewed manuscripts, with more currently being considered at journals and being prepared for future submissions.

Broader impacts: This work has been the primary support for one UT PhD student who has been trained in field and laboratory techniques, as well as computational analysis, and presentation (both written and oral) completely focused on this project. She has also submitted and revised a first-author paper from this work, and is preparing two more. This work has also supported an undergraduate student from rural Tennessee who published two first-authored peer-reviewed papers, won the NSF graduate research fellowship, and is now a PhD student at MIT. Furthermore, this work partially supported the work of another PhD student, who successfully defended his PhD and is now doing microbiological research in the US Army, as well as another undergraduate student who published a first-author peer-reviewed paper and is now a PhD student at Colorado State University. In addition, Lloyd published a short animated film for Scientific American, translating information about deep subsurface biogeochemistry and completed a book on this subject for popular audiences that will be published by Princeton University Press in May 2025.


Last Modified: 01/22/2025
Modified by: Karen G Lloyd

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