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Award Abstract # 1935372
Collaborative Research: Booting up a Mirror Cell

NSF Org: EF
Emerging Frontiers
Recipient: UNIVERSITY OF CALIFORNIA, SAN DIEGO
Initial Amendment Date: August 13, 2019
Latest Amendment Date: August 13, 2019
Award Number: 1935372
Award Instrument: Standard Grant
Program Manager: Charles Cunningham
chacunni@nsf.gov
 (703)292-2283
EF
 Emerging Frontiers
BIO
 Directorate for Biological Sciences
Start Date: September 1, 2019
End Date: August 31, 2025 (Estimated)
Total Intended Award Amount: $2,814,014.00
Total Awarded Amount to Date: $2,814,014.00
Funds Obligated to Date: FY 2019 = $2,814,014.00
History of Investigator:
  • Neal Devaraj (Principal Investigator)
    ndevaraj@ucsd.edu
Recipient Sponsored Research Office: University of California-San Diego
9500 GILMAN DR
LA JOLLA
CA  US  92093-0021
(858)534-4896
Sponsor Congressional District: 50
Primary Place of Performance: University of California-San Diego
9500 Gilman Dr
La Jolla
CA  US  92093-0332
Primary Place of Performance
Congressional District:
50
Unique Entity Identifier (UEI): UYTTZT6G9DT1
Parent UEI:
NSF Program(s): URoL-Understanding the Rules o,
Special Initiatives,
Cross-BIO Activities
Primary Program Source: 01001920DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 068Z, 1757, 7465
Program Element Code(s): 106Y00, 164200, 727500
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

A hallmark of life on Earth is homochirality, or the fact that many of the key biological molecules - proteins, nucleic acids, sugars, and lipids - possess the same chirality. The term chirality refers to the property of an object to be distinguishable from its mirror image. We often refer to this property colloquially as handedness, as our left and right hands are not superimposable yet are mirror images of one another. These properties motivate the exploration of constructing and studying mirror biomolecules. In this project, the researchers seek to take the first steps toward building a mirror synthetic cell, providing a unique lens through which we will attain a fundamental understanding of chirality in biological molecules, systems, and processes. From an applied perspective, the work could enable production of entirely new classes of materials and mirror drugs endowed with improved stability and activity. Creating substances that were previously impossible to create will lead to the next-generation of renewable biotechnology and medical products. This proposal will also promote interdisciplinary education, including the specific expansion of STEM education and career opportunities for underrepresented minorities and women. To educate the public, the research team will engage the artistic community to illustrate the science of chirality through art, culminating in a 'Mirror World' exhibit that will be displayed at local museums. By doing so, the research team aim to communicate the importance of molecular handedness to the public, ensuring that advances made in this project benefit a broader community and contribute to inspiring and training young scientists and engineers.

In this project, the researchers seek to design, construct, and safely deploy synthetic mirror cells in which all of the key molecules - nucleic acids, proteins, carbohydrates, and lipids - exist in chiral states opposite to their natural forms. Toward this goal, the team will develop the capabilities to synthesize mirror DNA, RNA, and proteins; predict the physiology of cells with mirror components; and assess the risks and rewards of mirror life. If successful, this project will transform basic science, bioengineering, and open up new applications in biotechnology. Synthetic mirror cells will offer a unique lens to help decipher the role of chirality across multiple scales of life and elucidate why natural life has focused on one chirality. The researchers will develop a foundation for mirror cells via five coupled research, education, and outreach activities: (1) developing schemes for chemically synthesizing mirror biomolecules; (2) repurposing the natural biological machinery to synthesize mirror nucleic acids and proteins; (3) developing a computational framework for predicting the physiological impact of alternative chirality; (4) identifying gaps in the current ethical, legal, and environmental framework for synthetic cells and proposing new metrics for assessing the risks and rewards of mirror life; and (5) inspiring and educating the public about the potential of mirror life by working with artists to develop a museum exhibit titled 'The Mirror World.' Looking forward, this work will be a foundation for the know-how and capabilities to design, produce, evaluate, and safely deploy synthetic mirror cells with transformative potential in biotechnology, medicine, and industry.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 12)
Cho, Christy J and An, Taeyang and Lai, Yei-Chen and Vázquez-Salazar, Alberto and Fracassi, Alessandro and Brea, Roberto J and Chen, Irene A and Devaraj, Neal K "Protocells by spontaneous reaction of cysteine with short-chain thioesters" Nature Chemistry , 2024 https://doi.org/10.1038/s41557-024-01666-y Citation Details
Deich, Christopher and Cash, Brock and Sato, Wakana and Sharon, Judee and Aufdembrink, Lauren and Gaut, Nathaniel J. and Heili, Joseph and Stokes, Kaitlin and Engelhart, Aaron E. and Adamala, Katarzyna P. "T7Max transcription system" Journal of Biological Engineering , v.17 , 2023 https://doi.org/10.1186/s13036-023-00323-1 Citation Details
Flores, Judith and Brea, Roberto J. and Lamas, Alejandro and Fracassi, Alessandro and SalvadorCastell, Marta and Xu, Cong and Baiz, Carlos R. and Sinha, Sunil K. and Devaraj, Neal K. "Rapid and Sequential Dual Oxime Ligation Enables De Novo Formation of Functional Synthetic Membranes from WaterSoluble Precursors" Angewandte Chemie International Edition , v.61 , 2022 https://doi.org/10.1002/anie.202200549 Citation Details
Gorochowski, Thomas E. and Karr, Jonathan R. and Parmeggiani, Fabio and Yordanov, Boyan "Editorial: Computer-Aided Biodesign Across Scales" Frontiers in Bioengineering and Biotechnology , v.9 , 2021 https://doi.org/10.3389/fbioe.2021.700418 Citation Details
Jin, Shuaijiang and Brea, Roberto J. and Rudd, Andrew K. and Moon, Stuart P. and Pratt, Matthew R. and Devaraj, Neal K. "Traceless native chemical ligation of lipid-modified peptide surfactants by mixed micelle formation" Nature Communications , v.11 , 2020 https://doi.org/10.1038/s41467-020-16595-w Citation Details
Kenchel, Josh and Vázquez-Salazar, Alberto and Wells, Reno and Brunton, Krishna and Janzen, Evan and Schultz, Kyle_M and Liu, Ziwei and Li, Weiwei and Parker, Eric_T and Dworkin, Jason_P and Chen, Irene_A "Prebiotic chiral transfer from self-aminoacylating ribozymes may favor either handedness" Nature Communications , v.15 , 2024 https://doi.org/10.1038/s41467-024-52362-x Citation Details
Khanal, Satyam and Brea, Roberto J. and Burkart, Michael D. and Devaraj, Neal K. "Chemoenzymatic Generation of Phospholipid Membranes Mediated by Type I Fatty Acid Synthase" Journal of the American Chemical Society , v.143 , 2021 https://doi.org/10.1021/jacs.1c02121 Citation Details
Mackelprang, Rebecca and Adamala, Katarzyna P. and Aurand, Emily R. and Diggans, James C. and Ellington, Andrew D. and Evans, Samuel Weiss and Fortman, J. L. and Hillson, Nathan J. and Hinman, Albert W. and Isaacs, Farren J. and Medford, June I. and Mamag "Making Security Viral: Shifting Engineering Biology Culture and Publishing" ACS Synthetic Biology , v.11 , 2022 https://doi.org/10.1021/acssynbio.1c00324 Citation Details
Martin, Hannah S. and Podolsky, Kira A. and Devaraj, Neal K. "Probing the Role of Chirality in Phospholipid Membranes" ChemBioChem , v.22 , 2021 https://doi.org/10.1002/cbic.202100232 Citation Details
Podolsky, K. A. and Masubuchi, T. and Debelouchina, G. T. and Hui, E. and Devaraj, N. K. "<i>In Situ</i> Assembly of Transmembrane Proteins from Expressed and Synthetic Components in Giant Unilamellar Vesicles" ACS Chemical Biology , v.17 , 2022 https://doi.org/10.1021/acschembio.2c00013 Citation Details
Podolsky, Kira A. and Devaraj, Neal K. "Synthesis of lipid membranes for artificial cells" Nature Reviews Chemistry , 2021 https://doi.org/10.1038/s41570-021-00303-3 Citation Details
(Showing: 1 - 10 of 12)

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

Many of the most important molecules in biology are chiral, which means their mirror image is distinguishable. This is often referred to as handedness as our left and right hands are not superimposable but are mirror images of one another. In this project, we sought to understand the limitations of engineering mirror image versions of biological molecules and machines that would be necessary to someday create fully mirrored synthetic biology. If possible, such a realization is likely many decades away, and therefore in the grant period we were interested in building technological platforms for engineering and studying chirality in biology. We did this through multiple thrusts including: (1) developing schemes for chemically synthesizing mirror biomolecules; (2) studying  the repurposing of natural biological machinery to synthesize mirror nucleic acids and proteins; (3) pursuing a computational framework for predicting the physiological impact of alternative chirality; (4) identifying gaps in the current ethical, legal, and environmental framework for mirror biology and proposing new metrics for assessing such research; and (5) inspiring and educating the public about the potential of mirror life. Our project aimed to understand the challenges, opportunities, risks, and rewards in pursuing mirror image biology, through developing technology to help synthesize mirror nucleic acids and proteins. Several challenges were encountered, especially with respect to synthesizing mirror biopolymers with the requisite purity needed to generate functional biomolecules. Our efforts also revealed the limitations of the genetic code and essential translation factors – the ribosome and associated machinery – to assess their malleability for modification and amenability to encode new chemistries into protein. Our studies led to new technologies for synthesizing simplified chiral lipid membranes, charging mirror amino acids on native biochemical machinery, engineering organisms with new genetic codes, and protein synthesis with unnatural chemistries. We also gained an improved understanding of the role of chirality in biology, for instance by exploring the role of chiral transfer between RNA and proteins. Our team also pursued several outreach opportunities, where we communicated the significance of chirality in biology to the public, inspiring and encouraging the training of the next generation of young scientists and engineers. We assembled a bioethics advisory committee to consider the safety and ethical risks related to pursuing mirror biology. While the field is still nascent, our work identified several risks and safeguards that should be considered as research advances and more advanced mirrored biomolecular machines are feasible to design and construct. The bioethics committee also laid the foundation for evaluating ethical and safety concerns. At the same time, we recognized that the further advancement of technologies for synthesizing mirror biomolecules could open applications in biotechnology and medicine. In addition, such research efforts could improve our understanding of the role that chirality plays, in synthetic biology, current cellular biology, and during the origin of life. 

 


Last Modified: 11/25/2024
Modified by: Neal K Devaraj

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