Award Abstract # 1929516
Collaborative Research: The brood cell microbiome of solitary bees: origin, diversity, function, and vulnerability

NSF Org: DEB
Division Of Environmental Biology
Recipient: UNIVERSITY OF CALIFORNIA, DAVIS
Initial Amendment Date: July 23, 2019
Latest Amendment Date: May 23, 2023
Award Number: 1929516
Award Instrument: Standard Grant
Program Manager: Christopher Balakrishnan
cbalakri@nsf.gov
 (703)292-2331
DEB
 Division Of Environmental Biology
BIO
 Directorate for Biological Sciences
Start Date: September 1, 2019
End Date: August 31, 2025 (Estimated)
Total Intended Award Amount: $297,335.00
Total Awarded Amount to Date: $352,704.00
Funds Obligated to Date: FY 2019 = $297,335.00
FY 2020 = $9,000.00

FY 2023 = $46,369.00
History of Investigator:
  • Rachel Vannette (Principal Investigator)
    rlvannette@ucdavis.edu
Recipient Sponsored Research Office: University of California-Davis
1850 RESEARCH PARK DR STE 300
DAVIS
CA  US  95618-6153
(530)754-7700
Sponsor Congressional District: 04
Primary Place of Performance: University of California-Davis
Davis
CA  US  95616-5270
Primary Place of Performance
Congressional District:
04
Unique Entity Identifier (UEI): TX2DAGQPENZ5
Parent UEI:
NSF Program(s): Systematics & Biodiversity Sci
Primary Program Source: 01002324DB NSF RESEARCH & RELATED ACTIVIT
01001920DB NSF RESEARCH & RELATED ACTIVIT

01002021DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 097Z, 1141, 1228, 9251
Program Element Code(s): 737400
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

Bees are the single most important pollinators of flowering plants worldwide. Over 85% of the 325,000 flowering plant species on earth depend on animals for pollination, and the vast majority of pollination is carried out by bees. Annually, bees are estimated to contribute $15 billion to US crop production and $170 billion to global crop production. High-value bee-pollinated crops include apple and other early spring tree fruits, strawberries, blueberries, cherries, cranberries, squash and pumpkins, tomatoes, almonds, and many others. The economic viability of US agricultural production is dependent on stable and healthy wild and domesticated bee populations. However, bee populations are threatened by a variety of factors, including habitat loss, pathogen spillover, invasive plants and animals, and pesticide use, which can disrupt the normal microbial symbionts essential for bee larval development (the "brood cell" microbiome). This research project focuses on understanding what role microbes play in the larval nutrition in a wide variety of bee species. Previous research has documented a diverse community of bacteria and yeasts in the pollen and nectar diet of bees. As larvae consume these pollen/nectar provisions they are ingesting microbes, and our preliminary results indicate that these microbes form an essential component of the larval diet. This project has the potential to significantly modify how we view the 120 million-year-old partnership between bees and flowering plants, and will provide essential information for developing long-term bee conservation efforts. Project outreach efforts include educational activities on solitary bees for K-12 students and interactive demonstrations of bee-microbe-flower interactions for broad audiences.

The project will use cutting-edge methods to (1) document the microbial diversity in flowers and pollen provisions, (2) determine the nutritional role of microbes in larval development and health, and (3) understand how alterations in microbial community impact larval development. To document microbial diversity in both host-plant flowers and pollen provisions, the research team will use amplicon sequencing and microbial metagenomics. These methods will document the microbial species present in pollen provisions as well as the metabolic activities these microbes perform during pollen maturation. Screening the pollen and nectar of host-plant species will provide key insights into the source of the brood cell microbiome. To determine the nutritional role of the microbial community the research team will use two methods from trophic ecology: compound specific isotope analysis and neutral lipid fatty acid analysis. These analyses will permit the research team to track the origin (floral or microbial) of amino acids and fatty acids in the larval diet of 15 focal bee species. Finally, through manipulative laboratory experiments the research team will determine how modifications of the microbial communities impact larval development. Combining the results of these studies will provide a comprehensive understanding of how bees and flowering plants interact via their shared microbial partners.

This project is jointly funded by the Systematics and Biodiversity Sciences Cluster (Division of Environmental Biology) and the Symbiosis, Defense and Self-recognition Program (Division of Integrative Organismal Systems).

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Alvarez-Perez, Sergio and Baker, Lydia J. and Morris, Megan M. and Tsuji, Kaoru and Sanchez, Vivianna A. and Fukami, Tadashi and Vannette, Rachel L. and Lievens, Bart and Hendry, Tory A. "Acinetobacter pollinis sp. nov., Acinetobacter baretiae sp. nov. and Acinetobacter rathckeae sp. nov., isolated from floral nectar and honey bees" International Journal of Systematic and Evolutionary Microbiology , v.71 , 2021 https://doi.org/10.1099/ijsem.0.004783 Citation Details
Christensen, Shawn M and Munkres, Ivan and Vannette, Rachel L "Nectar bacteria stimulate pollen germination and bursting to enhance their fitness" bioRxiv , 2021 https://doi.org/10.1101/2021.01.07.425766 Citation Details
Christensen, Shawn_M and Srinivas, Sriram and McFrederick, Quinn_S and Danforth, Bryan_N and Buchmann, Stephen_L and Vannette, Rachel_L "Symbiotic bacteria and fungi proliferate in diapause and may enhance overwintering survival in a solitary bee" The ISME Journal , 2024 https://doi.org/10.1093/ismejo/wrae089 Citation Details
Handy, Madeline Y. and Sbardellati, Dino L. and Yu, Michael and Saleh, Nicholas W. and Ostwald, Madeleine M. and Vannette, Rachel L. "Incipiently social carpenter bees ( Xylocopa ) host distinctive gut bacterial communities and display geographical structure as revealed by fulllength PacBio 16S rRNA sequencing" Molecular Ecology , v.32 , 2023 https://doi.org/10.1111/mec.16736 Citation Details
Morris, Megan M and Frixione, Natalie J and Burkert, Alexander C and Dinsdale, Elizabeth A and Vannette, Rachel L "Microbial abundance, composition, and function in nectar are shaped by flower visitor identity" FEMS Microbiology Ecology , v.96 , 2020 10.1093/femsec/fiaa003 Citation Details
Mueller, Tobias G. and Francis, Jacob S. and Vannette, Rachel L. "Nectar compounds impact bacterial and fungal growth and shift community dynamics in a nectar analog" Environmental Microbiology Reports , v.15 , 2023 https://doi.org/10.1111/1758-2229.13139 Citation Details
Rutkowski, Danielle and Weston, Makena and Vannette, Rachel L. "Bees just wanna have fungi: a review of bee associations with nonpathogenic fungi" FEMS Microbiology Ecology , v.99 , 2023 https://doi.org/10.1093/femsec/fiad077 Citation Details
Steffan, Shawn A and Dharampal, Prarthana S and Kueneman, Jordan G and Keller, Alexander and Argueta-Guzmán, Magda P and McFrederick, Quinn S and Buchmann, Stephen L and Vannette, Rachel L and Edlund, Anna F and Mezera, Celeste C and Amon, Nolan and Danfo "Microbes, the silent third partners of beeangiosperm mutualisms" Trends in Ecology & Evolution , v.39 , 2024 https://doi.org/10.1016/j.tree.2023.09.001 Citation Details
Vannette, Rachel L. "The Floral Microbiome: Plant, Pollinator, and Microbial Perspectives" Annual Review of Ecology, Evolution, and Systematics , v.51 , 2020 https://doi.org/10.1146/annurev-ecolsys-011720-013401 Citation Details

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