Award Abstract # 1828163
MRI: Acquisition of Hardware for the Enhancement of the ELSA High Performance Computing Cluster to Enable Computational Research at The College of New Jersey

NSF Org: OAC
Office of Advanced Cyberinfrastructure (OAC)
Recipient: COLLEGE OF NEW JERSEY
Initial Amendment Date: August 23, 2018
Latest Amendment Date: August 23, 2018
Award Number: 1828163
Award Instrument: Standard Grant
Program Manager: Alejandro Suarez
alsuarez@nsf.gov
 (703)292-7092
OAC
 Office of Advanced Cyberinfrastructure (OAC)
CSE
 Directorate for Computer and Information Science and Engineering
Start Date: September 1, 2018
End Date: August 31, 2021 (Estimated)
Total Intended Award Amount: $651,032.00
Total Awarded Amount to Date: $651,032.00
Funds Obligated to Date: FY 2018 = $651,032.00
History of Investigator:
  • Joseph Baker (Principal Investigator)
    bakerj@tcnj.edu
  • Michael Ochs (Co-Principal Investigator)
  • Wendy Clement (Co-Principal Investigator)
  • Paul Wiita (Co-Principal Investigator)
  • Michael Bloodgood (Co-Principal Investigator)
Recipient Sponsored Research Office: The College of New Jersey
2000 PENNINGTON RD
EWING
NJ  US  08618-1104
(609)771-3255
Sponsor Congressional District: 12
Primary Place of Performance: The College of New Jersey
P.O. Box 7718
Ewing
NJ  US  08628-0718
Primary Place of Performance
Congressional District:
12
Unique Entity Identifier (UEI): E4UZBXLPA2V3
Parent UEI:
NSF Program(s): Major Research Instrumentation
Primary Program Source: 01001819DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 026Z, 1189
Program Element Code(s): 118900
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.070

ABSTRACT

The College of New Jersey (TCNJ) will acquire equipment to significantly upgrade and enhance the Electronic Laboratory for Science and Analysis (ELSA) High Performance Computing cluster. TCNJ is a primarily undergraduate institution promoting a deep engagement of undergraduate students in research. Many of TCNJ's School of Science faculty members are working at the cutting edge of computational research in their fields, which include a broad range of areas including biochemistry/biophysics, genetics, bioinformatics, astrophysics, machine learning, and mathematical biology. In order to maintain a diverse and state of the art resource that meets the current and future computational needs of TCNJ's faculty and undergraduate students the current ELSA cluster requires targeted hardware enhancements. The new instrument will (1) enhance the research capacity and resulting scientific discovery of TCNJ's School of Science faculty members and their undergraduate research teams; (2) expose a greater number of undergraduate students and researchers to this powerful computational infrastructure through a series of newly developed High Performance Computing and data visualization short courses and workshops; and (3) improve access to the ELSA cluster for students traditionally underrepresented in STEM, as well as to researchers beyond TCNJ through a new collaboration with Open Science Grid.

This project will expand the research programs of more than 13 faculty members (many of whom are early career faculty) spanning all five of TCNJ's School of Science departments. The computationally intensive work that will be supported through this project includes a diverse array of scientific efforts, including studies of pilus biomechanics, estimations of cell signaling processes, methods for investigating the strength of passwords and security of password systems, and improving our understanding of the most energetic objects in the universe. Currently, the research programs of TCNJ faculty members in these and other areas are restricted by inadequate graphic processing unit (GPU) resources and by the slow speed aging central processing unit (CPU) servers part of the current instrumentation. The new ELSA cluster will allow faculty and student researchers at TCNJ to run workflows ranging from embarrassingly parallel computations, to those that necessitate high levels of parallelization over hundreds of cores, intensive GPU computations, and remote visualization of simulation results. The instrument will thus ensure that these research programs are able to reach their full potential. This project will also benefit nearly 100 undergraduate student researchers each year who are part of these labs and work directly on the cluster. As a result, in addition to improving the capacity for scientific discovery, the proposed acquisition will help TCNJ meet the demands of developing an undergraduate workforce that is ready to leverage increasingly powerful High-Performance Computing resources, now and in their future careers.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 33)
Altschuler, Michael and Bloodgood, Michael "Stopping Active Learning Based on Predicted Change of F Measure for Text Classification" 2019 IEEE 13th International Conference on Semantic Computing (ICSC) , 2019 10.1109/ICOSC.2019.8665646 Citation Details
Baker, Joseph L. and Dahlberg, Tobias and Bullitt, Esther and Andersson, Magnus "Impact of an alpha helix and a cysteinecysteine disulfide bond on the resistance of bacterial adhesion pili to stress" Proceedings of the National Academy of Sciences , v.118 , 2021 https://doi.org/10.1073/pnas.2023595118 Citation Details
Battista, Nicholas A "Diving into a Simple Anguilliform Swimmers Sensitivity" Integrative and Comparative Biology , v.60 , 2020 https://doi.org/10.1093/icb/icaa131 Citation Details
Battista, Nicholas A "Swimming Through Parameter Subspaces of a Simple Anguilliform Swimmer" Integrative and Comparative Biology , v.60 , 2020 https://doi.org/10.1093/icb/icaa130 Citation Details
Battista, Nicholas A. "Fluid-Structure Interaction for the Classroom: Interpolation, Hearts, and Swimming!" SIAM Review , v.63 , 2021 https://doi.org/10.1137/18M1209283 Citation Details
Battista, Nicholas A. "Suite-CFD: An Array of Fluid Solvers Written in MATLAB and Python" Fluids , v.5 , 2020 10.3390/fluids5010028 Citation Details
Battista, Nicholas and Douglas, Dylan and Lane, Andrea and Samsa, Leigh and Liu, Jiandong and Miller, Laura "Vortex Dynamics in Trabeculated Embryonic Ventricles" Journal of Cardiovascular Development and Disease , v.6 , 2019 10.3390/jcdd6010006 Citation Details
Beatty, Garrett and Kochis, Ethan and Bloodgood, Michael "The Use of Unlabeled Data Versus Labeled Data for Stopping Active Learning for Text Classification" 2019 IEEE 13th International Conference on Semantic Computing (ICSC) , 2019 10.1109/ICOSC.2019.8665546 Citation Details
Bolle, Nicolas and Mizuhara, Matthew S. "Dynamics of a cell motility model near the sharp interface limit" Journal of Theoretical Biology , 2020 10.1016/j.jtbi.2020.110420 Citation Details
Carter, Erin E. and Heyert, Alexanndra J. and De Souza, Mattheus and Baker, Joseph L and Lindberg, Gerrick E "The Ionic Liquid [C 4 mpy][Tf 2 N] Induces Bound-like Structure in the Intrinsically Disordered Protein FlgM" Physical Chemistry Chemical Physics , 2019 10.1039/C9CP01882D Citation Details
Chan, Benny C. and Baker, Joseph L. and Bunagan, Michelle R. and Ekanger, Levi A. and Gazley, J. Lynn and Hunter, Rebecca A. and OConnor, Abby R. and Triano, Rebecca M. "Theory of Change to Practice: How Experimentalist Teaching Enabled Faculty to Navigate the COVID-19 Disruption" Journal of Chemical Education , v.97 , 2020 https://doi.org/10.1021/acs.jchemed.0c00731 Citation Details
(Showing: 1 - 10 of 33)

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

The School of Science faculty at The College of New Jersey (TCNJ), a primarily undergraduate institution, are engaged in novel, cutting edge research with undergraduate students. Engaging undergraduates in closely mentored research is critical to developing the next generation of scientists, and for providing deep intellectual growth for students as they pursue their degrees. This grant funded the acquisition of hardware to significantly upgrade and enhance TCNJ's high performance computing (HPC) cluster, the Electronic Laboratory for Science and Analysis (ELSA). 

Intellectual merit: The ELSA cluster has: (1) significantly enhanced the research capacity and resulting scientific discoveries made by TCNJ's School of Science faculty members and their undergraduate research teams; (2) exposed a greater number of undergraduate student researchers to this powerful computational infrastructure through closely mentored research during the academic year and throughout the summer, including through the Mentored Undergraduate Summer Experience program and summer HPC workshops; (3) created opportunities for nearly 1000 students per year in a variety of courses to engage with the HPC cluster; and (4) improved access to HPC resources for students traditionally underrepresented in STEM, as well as to researchers outside of TCNJ through our ongoing, successful collaboration with Open Science Grid. Research performed on the cluster included: computational biophysics of proteins, genomic studies of honeysuckles, mathematical modeling of cancer therapeutics, the modeling of relativistic jets and variability in quasars and blazars, computational modeling of human crowd motion and behavior, and geophysics, amongst other topics.

Broader Impacts: The presence of the ELSA cluster on campus has allowed 21 School of Science faculty to engage 100 undergraduate students in authentic, mentored research projects over the three-year award period. In addition, between 750 - 1,050 students accessed the ELSA cluster in a wide range of courses each year (including courses in Physics, Mathematics and Statistics, Biology, Computer Science, Chemistry, and Business), further enhancing the computational training of TCNJ students and their exposure to high performance computing tools and methods. Post-graduation outcomes for students engaged in research using the ELSA cluster are quite varied and include enrollment in PhD programs, post-graduate health education (e.g., medical and dental school), or being hired directly into jobs within industry. Students and faculty have presented their research projects at local, regional, and national meetings, and students have been included as co-authors on published research that has been accomplished using the ELSA cluster (26 papers have been published by ELSA user groups during the three-year award period). Additionally, a major goal of the TCNJ School of Science is to increase diversity of the STEM workforce through training of our undergraduates, and the ELSA cluster has helped us to achieve this goal within the computational sciences. For example, the percentage of female research students using the ELSA cluster has increased from 25% in Year one to 43% in Year three, and the percentage of students of color using the ELSA cluster for research has increased from 36% in Year one to 50% in Year three. The ELSA cluster has thus continued to expand research opportunities in areas of computational science across many disciplines to students who are underrepresented, helping to train  an increasingly diverse group of students and resulting in strengthening the STEM workforce.


Last Modified: 09/30/2021
Modified by: Joseph Baker

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