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Award Abstract # 1827084
CAREER: Three Region nLC-MS/MS Analysis: A Novel and Rapid Approach to Evaluate Molecular Penetration

NSF Org: CHE
Division Of Chemistry
Recipient: OHIO STATE UNIVERSITY, THE
Initial Amendment Date: February 8, 2018
Latest Amendment Date: February 8, 2018
Award Number: 1827084
Award Instrument: Continuing Grant
Program Manager: Kelsey Cook
CHE
 Division Of Chemistry
MPS
 Directorate for Mathematical and Physical Sciences
Start Date: January 1, 2018
End Date: May 31, 2020 (Estimated)
Total Intended Award Amount: $210,354.00
Total Awarded Amount to Date: $210,354.00
Funds Obligated to Date: FY 2015 = $198,456.00
FY 2017 = $11,897.00
History of Investigator:
  • Amanda Hummon (Principal Investigator)
    hummon.1@osu.edu
Recipient Sponsored Research Office: Ohio State University
1960 KENNY RD
COLUMBUS
OH  US  43210-1016
(614)688-8735
Sponsor Congressional District: 03
Primary Place of Performance: The Ohio State University
OH  US  43210-1016
Primary Place of Performance
Congressional District:
03
Unique Entity Identifier (UEI): DLWBSLWAJWR1
Parent UEI: MN4MDDMN8529
NSF Program(s): INSTRUMENTAT & INSTRUMENT DEVP,
Chemical Measurement & Imaging
Primary Program Source: 01001516DB NSF RESEARCH & RELATED ACTIVIT
01001718DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 1045, 7237, 8007
Program Element Code(s): 110800, 688000
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.049

ABSTRACT

In this CAREER project, Professor Amanda Hummon and her students at the University of Notre Dame will develop a new mass spectrometric methodology for the analysis of chemical compounds in cell cultures. The approach will provide much greater chemical and spatial information in a faster and higher-throughput fashion than is currently available with any other methodology. As part of this CAREER educational program, Professor Hummon and her students will develop a program focused on the recruitment and retention of women in STEM fields by organizing lab tours with three local Girl Scout troops per year and participation in two forums per semester to discuss issues that disproportionally affect women. This program will encourage the participation of younger female students in science careers.

This research will study the penetration of chemical compounds into three dimensional cell culture models via mass spectrometry. Using a combination of serial trypsinization and nano Liquid Chromatography-Electrospray Tandem Mass Spectrometry (nLC-MS/MS), the distribution of a compound and its metabolites can be mapped with spatial fidelity. While previous studies have utilized computer simulations to predict molecular penetration through cells, measurement of the molecules remains the only reliable way to evaluate the effectiveness of a new species. The approach will be tested with the compounds irinotecan, oxaliplatin, and apoptotic imaging probes. This award from the Chemical Measurements and Imaging program in the Division of Chemistry is made jointly with the Instrument Development for Biological Research program in the Division of Biological Infrastructure.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 16)
Andrews, W.T.; Skube, S.B; Hummon, A.B. "Magnetic Bead-Based Peptide Extraction Methodology for Tissue Imaging" Analyst , 2017
Bailey, K.A.; Klymenko, Y.; Feist, P.E.; Hummon, A.B.; Stack, M.S.; Schultz, Z.D. "Chemical Analysis of Morphological Changes in Lysophosphatidic Acid-Treated Ovarian Cancer Cells" Scientific Reports , v.7 , 2017 , p.15295 10.1038/s41598-017-15547-7.
Boyce, M.W.; LaBonia, G.J.; Hummon, A.B.; Lockett MR. "Assessing chemotherapeutic effectiveness using a paper-based tumor model" Analyst , v.142 , 2017 , p.2819 10.1039/c7an00806f.
Chen, D.; Ludwig, K.R.; Yang, Z.; Shen, X.; Hummon, A.B.; Sun, L. "Capillary zone electrophoresis-tandem mass spectrometry for large-scale phosphoproteomics with the production of over 11000 phosphopeptides from the colon carcinoma HCT116 cell line" Analytical Chemistry , v.91 , 2019 , p.2201 10.1021/acs.analchem.8b04770.
Feist, P.E.; Loughran, E.A.; Stack, M.S.; Hummon, A.B. "Quantitative Proteomic Analysis of Murine White Adipose Tissue for Peritoneal Cancer Metastasis" Analytical and Bioanalytical Chemistry , 2017
LaBonia, G.J.; Ludwig, K.R.; Mousseau, C.B.; Hummon, A.B. "iTRAQ Quantitative Proteomic Profiling and MALDI-MSI of Colon Cancer Spheroids Treated with Combination Chemotherapies in a 3D Printed Fluidic Device" Analytical Chemistry , 2018
Liu, X.; Flinders, C.; Mumenthaler, S.M.; Hummon, A.B. "MALDI Imaging Mass Spectrometry for Evaluation of Therapeutics in Colorectal Tumor Organoids" Journal of the American Society for Mass Spectrometry , 2018
Liu, X.; Lukowski, J.K.; Flinders, C.; Mumenthaler, S.; Hummon, A.B. "MALDI-MSI of Immunotherapy: Mapping the EGFR-Targeting Antibody Cetuximab in 3D Colon Cancer Cell Cultures" Analytical Chemsitry , v.90 , 2018 , p.14156 10.1021/acs.analchem.8b02151.
Ludwig, K.R.; Schroll, M.M. Hummon, A.B. "Comparison of In-Solution, FASP, and S-Trap Based Digestion Methods for Bottom-Up Proteomic Studies" Journal of Proteome Research , v.17 , 2018 , p.2480 10.1021/acs.jproteome.8b00235
Lukowski, J.K.; Hummon, A.B. "Quantitative Evaluation of Liposomal Doxorubicin and its Metabolites in Tumor Spheroids" Analytical and Bioanalytical Chemistry , v.411 , 2019
Lukowski, J.K.; Weaver, E.M.; Hummon, A.B. "Analyzing Liposomal Drug Delivery Systems in Three-Dimensional Cell Culture Models Using MALDI Imaging Mass Spectrometry" Analytical Chemistry , 2017
(Showing: 1 - 10 of 16)

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

With this award, we have accomplished two main goals: 1) develop a better way to test new drugs in the laboratory and 2) help recruit young women to pursue careers in science. With regards the first goal, we developed an approach to evaluate drug penetration and metabolism that minimizes animal testing. When new drugs are developed, they need to be extensively evaluated before they can be used to treat people. Traditionally, drugs will be tested on animals, usually mice, to assess their properties in live cells. While this is still a necessary step, we have developed a cell culture approach that can be used prior to animal testing to determine if drugs will penetrate a mass of cells and if they will be metabolized by the cells. Only drugs that perform as expected with the cell masses are then tested on animals.

Our approach uses three-dimensional human cell cultures. These cells were previously donated by patients for scientific research and we use them to test the effects of new drugs. We grow the cells into three-dimensional structures that mimic human tumors. These structures are known as spheroids and, similar to a tumor, the cells inside the spheroid can differ substantially in their health and viability.  We can isolate different populations of the cells from the structure with a process known as serial trypsinization. The distinct cell populations are analyzed with a technique called mass spectrometry, where some of the molecules in the cell are weighed to determine their identity and abundance.  

In our new method, we are figuring out if new drugs work. To accomplish this goal, we use a combination of spheroids, serial trypsinization and mass spectrometry to determine where the drug goes in the cell mass (penetration) and how it is broken down in the cells (metabolism).  While this approach does not eliminate the need for animal testing, it is a viable precursor that helps to reduce the numbers of compounds that need to progress to animal models. Over the last six years, we have used this approach to evaluate many compounds. We started with FDA-approved compounds as we validated our methods, for example, irinotecan and doxorubicin. We have also used the approach to evaluate new compounds, including compounds from the laboratory of Bradley Smith at Notre Dame and more recently, from Dehua Pei’s laboratory at Ohio State. In some cases, the drugs have shown effective penetration and metabolism in the cell cultures and have moved onto animal testing and, for those that do not, their synthesis is being optimized in the laboratory.

For our second goal, help recruit young women to pursue careers in science, we have hosted Girl Scout troops in our lab over the last six years. The girls visit the lab for a day, perform experiments with my graduate students and learn about the scientific process. These visits have been a positive experience for my students and, as evidenced my surveys of the girls, the Girl Scouts too. During the course of the award, we have hosted four groups in our lab. A fifth group was scheduled to visit in May 2020, but that trip has been postponed due to the COVID pandemic. We will reschedule the visit once the situation improves.

Overall, with the generous funding from the NSF, we have successful completed the two goals for this project and look forward parlaying these results into additional discoveries. We are grateful for the support from the NSF.

 


Last Modified: 07/31/2020
Modified by: Amanda Hummon

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