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Award Abstract # 1802583
Uncovering novel microbial ecological relationships that foster enhanced pollutant biodegradation rates in contaminated groundwater systems

NSF Org: CBET
Division of Chemical, Bioengineering, Environmental, and Transport Systems
Recipient: THE UNIVERSITY OF IOWA
Initial Amendment Date: July 26, 2018
Latest Amendment Date: July 26, 2018
Award Number: 1802583
Award Instrument: Standard Grant
Program Manager: Mamadou Diallo
CBET
 Division of Chemical, Bioengineering, Environmental, and Transport Systems
ENG
 Directorate for Engineering
Start Date: August 1, 2018
End Date: July 31, 2022 (Estimated)
Total Intended Award Amount: $329,993.00
Total Awarded Amount to Date: $329,993.00
Funds Obligated to Date: FY 2018 = $329,993.00
History of Investigator:
  • Timothy Mattes (Principal Investigator)
    tim-mattes@uiowa.edu
Recipient Sponsored Research Office: University of Iowa
105 JESSUP HALL
IOWA CITY
IA  US  52242-1316
(319)335-2123
Sponsor Congressional District: 01
Primary Place of Performance: University of Iowa
IA  US  52242-1320
Primary Place of Performance
Congressional District:
01
Unique Entity Identifier (UEI): Z1H9VJS8NG16
Parent UEI:
NSF Program(s): EnvE-Environmental Engineering
Primary Program Source: 01001819DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s):
Program Element Code(s): 144000
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.041

ABSTRACT

Vinyl chloride (VC) is a known carcinogen and common groundwater pollutant that may negatively impact drinking water supplies. Although some bacteria are known to remove VC from groundwater, little is known about the ecology of these organisms, especially under the low oxygen conditions that often occur in groundwater. An improved fundamental understanding of the interactions between these organisms, as well as interactions with other bacteria in the ecosystem may lead to the development of novel remediation strategies. The proposed work will benefit society by developing more precise and sustainable remediation strategies based on microbial ecology. Additional broader impacts include the training of undergraduate and graduate students to apply microbial ecology tools to environmental problems, increasing the participation of underrepresented groups in engineering, sharing research findings with environmental professionals and regulators, and providing research opportunities to high school students interested in pursuing Science, Technology, Engineering, and Math (STEM) topics. If successful, this research will provide valuable tools to help ensure the Nation's water security.

VC is typically generated by incomplete anaerobic biodegradation of the widely used chlorinated solvents tetrachloroethene and trichloroethene. Because anaerobic VC dechlorinating bacteria, and oxygenic nitrogen-cycling bacteria generate products that can be useful as primary and cometabolic substrates and electron acceptors for VC-oxidizers, it is hypothesized that there are novel ecological relationships between these microbial groups at oxic/anoxic interfaces or in regions of low-level oxygen flux at VC contaminated sites. This research will probe the interactions between aerobic VC-oxidizing bacteria and anaerobic VC-dechlorinating bacteria at low oxygen fluxes in contaminated groundwater environments to identify potential significant positive impacts of these interactions on VC biodegradation rates. The investigations will include three specific tasks: 1) Demonstrate simultaneous oxidation and reduction of VC in laboratory microcosms; 2) Investigate spatial relationships between VC-oxidizers, anaerobic VC-dechlorinators, and potential oxygen-producing bacteria in sediment samples from a VC-contaminated site; and 3) Investigate potential interspecies oxygen transfer relationships in low dissolved oxygen (DO) laboratory microcosms. Field samples will be analyzed by quantitative PCR and fluorescence in situ hybridization-confocal scanning laser microscopy to study spatial relationships between VC-oxidizers, anaerobic VC-dechlorinators, and potential oxygen-producing bacteria in sediment samples. Microcosm studies, including the use of oxygen permeation tubes to create low-DO flux conditions, will be used for modeling the interactions between these organisms. Finally, oxygen stable isotopes will be employed to investigate potential interspecies oxygen transfer relationships in microcosms. This project should reveal the important roles that aerobic and oxygenic nitrogen-cycling microorganisms play in mediating subsurface biodegradation reactions. An improved understanding of the contribution of aerobic processes to VC biodegradation rates will spur the transformative development of predictive quantitative relationships between the diverse microbial communities and VC attenuation. Improvements in management of groundwater contaminated with chlorinated solvents could be realized by developing more sustainable and precise approaches to remediation that involve more targeted electron donor/acceptor injections or developing bioaugmentation cultures capable of enhanced VC biodegradation. This improved understanding of aerobic biodegradation processes in subsurface systems could also extend to compounds beyond the chlorinated ethenes, as oxygenic and low oxygen flux scenarios are relevant to a variety of subsurface biodegradation processes.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Richards, Patrick M. and Ewald, Jessica M. and Zhao, Weilun and Rectanus, Heather and Fan, Dimin and Durant, Neal and Pound, Michael and Mattes, Timothy E. "Natural Biodegradation of Vinyl Chloride and cis-Dichloroethene in Aerobic and Suboxic Conditions" Environmental Science and Pollution Research , v.29 , 2022 https://doi.org/10.1007/s11356-022-19755-1 Citation Details
Richards, Patrick M. and Mattes, Timothy E. "Detection of an alkene monooxygenase in vinyl chloride-oxidizing bacteria with GeneFISH" Journal of microbiological methods , v.181 , 2021 https://doi.org/https://doi.org/10.1016/j.mimet.2021.106147 Citation Details
Zhao, Weilun and Richards, Patrick M. and Mattes, Timothy E. "Contrasting regulatory effects of organic acids on aerobic vinyl chloride biodegradation in etheneotrophs" Applied Microbiology and Biotechnology , 2022 https://doi.org/10.1007/s00253-022-12147-y Citation Details

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

The overall objective of this project was to uncover novel ecological relationships among aerobic and anaerobic vinyl chloride (VC)-degrading bacteria, and oxygen-producing bacteria in VC-contaminated groundwater environments. VC, a known human carcinogen, is frequently found at chlorinated ethene contaminated sites because of incomplete anaerobic bioremediation of chlorinated solvents such as tetrachloroethene and trichloroethene. VC-oxidizing bacteria could play a significant role in VC removal in contaminated groundwater systems by either fortuitously oxidizing VC or utilizing VC directly as a carbon and energy source when enough oxygen is present to use as the electron acceptor and reactant. Because anaerobic VC-reducing bacteria generate products useful as substrates for VC-oxidizers, there are possible ecological relationships between these microbial groups near sources of low-level oxygen flux in high VC concentration zones at contaminated sites. We hypothesized that VC oxidation and reduction can occur nearly simultaneously under low dissolved oxygen concentrations, possibly in biofilms containing anaerobic VC-degraders at the core and aerobic VC-degraders at the surface. Furthermore, we also postulated the oxygen-producing bacteria could serve as a source of oxygen for VC-oxidizers in otherwise highly anaerobic environments that favor anaerobic VC-degrading bacteria.

To test these hypotheses, we aimed to demonstrate simultaneous oxidation and reduction of VC in laboratory microcosms using a mixed culture of anaerobic and aerobic VC-degrading bacteria. Next, we investigated spatial relationships between VC-oxidizers, anaerobic VC-dechlorinators, and potential oxygen-producing bacteria in sediment samples from a VC-contaminated site. Finally, we searched for bacteria that convert nitric oxide into nitrogen and oxygen gas in the environment as a way of exploring potential novel oxygen transfer relationships.

There were several significant outcomes of this work. First, by using oxygen permeation tubes we showed that bacteria in contaminated aquifer materials oxidized VC under conditions that are nominally anaerobic. That is, there is little to no measurable oxygen. (https://doi.org/10.1007/s00253-022-12147-y). This is an important ability for VC-oxidizing bacteria to survive under low oxygen conditions in contaminated habitats dominated by anaerobic bacteria. Next, we discovered that a bacterial strain (Nocardioides sp. strain JS614) oxidized VC and several different organic acids (e.g., acetate, propionate, butyrate) simultaneously, while not responding to the presence of lactate (https://doi.org/10.1007/s11356-022-19755-1). This outcome is important because anaerobic microbial communities that dehalogenate VC and other chlorinated ethenes produce organic acids, and lactate is often used to biostimulate these anaerobic communities as a bioremediation strategy. Thus, VC-oxidizing bacteria like JS614 will not be adversely affected by the presence of organic acids. Next, we showed that VC oxidation and reduction occurred simultaneously in a mixed culture of anaerobic VC-degrading bacteria and VC-oxidizing strain JS614 fed VC and low amounts of oxygen (0-1 mg/L). This major finding - that these two bacterial groups can co-exist - holds significant intellectual merit because the current paradigm is that these bacterial groups are incompatible and are well separated from each other in the environment.

We developed a fluorescence microscopy technique for VC-oxidizing bacteria that allows us to see these bacteria in laboratory cultures and environmental samples (https://doi.org/10.1016/j.mimet.2021.106147). This new microbiological method, when combined with other fluorescent microscopy techniques, can be used to visualize spatial relationships between aerobic and anaerobic VC-degrading bacteria in laboratory suspended cultures and/or biofilms and in environmental samples where both groups are known to be present.

The chlorinated solvent bioremediation field is focused on anaerobic reductive dechlorination processes, and the contributions of aerobic bacteria are generally under-recognized by scientists and consultants. Applying the science of microbial ecology in this project has advanced the bioremediation field with respect to clean-up of chlorinated ethene contamination and could ultimately affect bioremediation outcomes. This improved understanding of ecological relationships between VC dechlorinators and VC oxidizers has the potential to foster novel and more effective VC bioremediation strategies and possibly develop new commercial products for bioremediation. For instance, this understanding could lead to decreasing the amount of electron donor added to treatment zones and/or the development of new bioaugmentation cultures containing both aerobic and anaerobic bacteria for use in chlorinated solvent remediation.

The project outcomes described here, because they address anthropogenic deterioration of water quality by xenobiotic compounds, has the potential to benefit society by providing a deeper understanding of the role microorganisms play in ameliorating the negative consequences. Further broader impacts of the work were realized by coordinating with existing educational programs at the University of Iowa to achieve the following objectives: (1) Train undergraduate and graduate environmental engineering students to apply microbial ecology tools to environmental problems, (2) establish bacterial cultures with the potential for commercial applications, (3) develop strategies to more broadly disseminate the research among the bioremediation community and (4) foster the participation of high school students interested in pursuing Science, Technology, Engineering and Math (STEM) education.


Last Modified: 12/20/2022
Modified by: Timothy E Mattes

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