Award Abstract # 1802301
Digitization TCN: Collaborative Research: Capturing California's Flowers: using digital images to investigate phenological change in a biodiversity hotspot

NSF Org: DBI
Division of Biological Infrastructure
Recipient: CAL POLY CORPORATION
Initial Amendment Date: June 11, 2018
Latest Amendment Date: August 16, 2021
Award Number: 1802301
Award Instrument: Continuing Grant
Program Manager: Reed Beaman
rsbeaman@nsf.gov
 (703)292-7163
DBI
 Division of Biological Infrastructure
BIO
 Directorate for Biological Sciences
Start Date: August 1, 2018
End Date: July 31, 2023 (Estimated)
Total Intended Award Amount: $505,327.00
Total Awarded Amount to Date: $505,327.00
Funds Obligated to Date: FY 2018 = $137,458.00
FY 2019 = $144,237.00

FY 2020 = $98,780.00

FY 2021 = $124,852.00
History of Investigator:
  • Jennifer Yost (Principal Investigator)
    jyost@calpoly.edu
Recipient Sponsored Research Office: California Polytechnic State University Foundation
1 GRAND AVE BLDG 15
SAN LUIS OBISPO
CA  US  93407-9000
(805)756-2982
Sponsor Congressional District: 24
Primary Place of Performance: California Polytechnic State University
One Grand Ave
San Luis Obispo
CA  US  93407-0830
Primary Place of Performance
Congressional District:
24
Unique Entity Identifier (UEI): MC4RJJM9XLT5
Parent UEI:
NSF Program(s): Digitization
Primary Program Source: 01001819DB NSF RESEARCH & RELATED ACTIVIT
01001920DB NSF RESEARCH & RELATED ACTIVIT

01002021DB NSF RESEARCH & RELATED ACTIVIT

01002122DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 6895
Program Element Code(s): 689500
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

Flowering time is an important biological phenomenon, affecting human societies through its effects on agricultural crops, pollinators, pests, and biodiversity. Given the sensitivity of flowering times to climatic conditions, a thorough understanding of how plants respond to changing environments is necessary for predicting the consequences for pollinators, herbivores, parasites, and plant populations. A record of historical flowering times is found within the nation's herbaria. This award establishes a thematic collection network (TCN) dedicated to understanding flowering time shifts in the California flora. California has the most diverse native flora of any state in the U.S., containing more than one-third of all U.S. plant species. The state is a biodiversity hotspot due to the high number of endemic species that are also threatened. The Capturing California's Flowers (CCF) TCN will record flowering times from and create images of over 900,000 herbarium specimens from the oldest records, the most diverse families, and most threatened families in California. Twenty-two institutions spanning the state, including public universities, state agencies, museums, and botanic gardens, will participate in these efforts. This project will generate data that will increase our understanding of flowering time shifts - a critical need for agriculturalists, conservation biologists, plant taxonomists, land managers, and wildlife biologists.

Digitization of each specimen in the CCF TCN will result in a high-resolution image, a databased record of collection metadata, a georeferenced point, and the reproductive status of the specimen. New tools will be developed for the public to search and display phenological data through a Symbiota portal interface. The CCF TCN will develop novel data standards for capturing and sharing trait data from specimens. Building on already successful national and regional programs, the CCF TCN will partner with schools, universities, botanical clubs, and the general public to crowd source phenological measurements through online expeditions, workshops, new college courses, and K-12 educational programs. The CCF TCN will provide a historical record of plants currently being monitored through the National Phenology Network and other regional programs. Finally, this award will expand efforts to train the "next generation" of museum curators, collectors, and researchers. This award is made as part of the National Resource for Digitization of Biological Collections through the Advancing Digitization of Biological Collections program, and all data resulting from this award will be available through the national resource (iDigBio.org).

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Gamble, Devin E. and Mazer, Susan J. "Spatial uncertainty in herbarium data: simulated displacement but not error distance alters estimates of phenological sensitivity to climate in a widespread California wildflower" Ecography , v.2022 , 2022 https://doi.org/10.1111/ecog.06107 Citation Details
Lorieul, Titouan and Pearson, Katelin D. and Ellwood, Elizabeth R. and Goëau, Hervé and Molino, JeanFrancois and Sweeney, Patrick W. and Yost, Jennifer M. and Sachs, Joel and MataMontero, Erick and Nelson, Gil and Soltis, Pamela S. and Bonnet, Pierre an "Toward a largescale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras" Applications in Plant Sciences , v.7 , 2019 https://doi.org/10.1002/aps3.1233 Citation Details
Love, Natalie L. Rossington and Park, Isaac W. and Mazer, Susan J. "A new phenological metric for use in phenoclimatic models: A case study using herbarium specimens of Streptanthus tortuosus" Applications in Plant Sciences , v.7 , 2019 https://doi.org/10.1002/aps3.11276 Citation Details
Pearson, Katelin D. and Love, Natalie L. and Ramirez-Parada, Tadeo and Mazer, Susan J. and Yost, Jenn M. "PHENOLOGICAL TRENDS IN THE CALIFORNIA POPPY (ESCHSCHOLZIA CALIFORNICA): DIGITIZED HERBARIUM SPECIMENS REVEAL INTRASPECIFIC VARIATION IN THE SENSITIVITY OF FLOWERING DATE TO CLIMATE CHANGE" Madroño , v.68 , 2021 https://doi.org/10.3120/0024-9637-68.4.343 Citation Details
Simpson, Michael G. and Hasenstab-Lehman, Kristen and Mabry, Makenzie E. and Muñoz-Schick, Mélica "Johnstonella punensis (Boraginaceae), a new species endemic to the dry Puna of Chile" PhytoKeys , v.197 , 2022 https://doi.org/10.3897/phytokeys.197.84833 Citation Details
Simpson, Michael G. and Rebman, Jon P. "A NEW SPECIES OF CRYPTANTHA RESTRICTED TO DUNES IN NORTHWESTERN BAJA CALIFORNIA, MEXICO" Madroño , v.68 , 2021 https://doi.org/10.3120/0024-9637-68.2.127 Citation Details
SIMPSON, MICHAEL G. and REBMAN, JON P. "Research in Boraginaceae: A new variety of Cryptantha maritima, Cryptantha pondii resurrected, and Johnstonella echinosepala transferred back to Cryptantha" Phytotaxa , v.509 , 2021 https://doi.org/10.11646/phytotaxa.509.2.3 Citation Details
Yost, Jenn M. and Pearson, Katelin D. and Alexander, Jason and Gilbert, Edward and Hains, Layla Aerne and Barry, Teri and Bencie, Robin and Bowler, Peter and Carter, Benjamin and Crowe, Rebecca E. and Dean, Ellen and Der, Joshua and Fisher, Amanda and Fis "THE CALIFORNIA PHENOLOGY COLLECTIONS NETWORK: USING DIGITAL IMAGES TO INVESTIGATE PHENOLOGICAL CHANGE IN A BIODIVERSITY HOTSPOT" Madroño , v.66 , 2020 10.3120/0024-9637-66.4.130 Citation Details

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

The California Phenology (CAP) TCN aimed to digitize plant specimens housed at 22 herbaria across California to understand when plants flowered in the past. This project greatly exceeded its digitization goals by producing 1.03 million specimen images (114% of our 904,200 goal), transcribing 359,000 specimens (120% of our goal), generating georeference coordinates for 356,000 specimens (119% of our goal), and generating standardized phenological data (i.e., flowering/fruiting status) for 1.64 million specimens (183% of our goal). We generated a dataset capable of addressing major questions about the flora of California, a biodiversity hotspot that is experiencing rapid climate shifts. The CAP TCN made significant improvements to California?s herbarium data infrastructure with a new, publicly accessible data portal, modern data curation tools, and specimen image serving capabilities (https://cch2.org). We also pioneered the use of data standards to store and share flowering time data from herbarium specimens. The publicly accessible, online database and data management system, The CCH2, now shares over 4.8 million specimen records, 2 million images, and 1.64 million phenological scorings from 75 collections. Our data has been cited over 700 times according to the Global Biodiversity Information Facility (https://gbif.org), where CCH2 data is also shared.  The investment in digitizing infrastructure is allowing these institutions to continue digitizing now and into the future. 

The CAP Network directly engaged over 1,200 students, staff, faculty, and volunteers in digitization and curation activities, and over 4,500 people were introduced to biocollections, biodiversity, and research using natural history collections over the 5 years of the project. The CAP Network developed and led multiple high-quality educational and outreach experiences during this project, the impact of which will continue beyond the grant. Four undergraduate courses (two course-based undergraduate research experiences, one skill-building internship, and one seminar course) were developed, engaging over 160 students across 14 California universities. Herbarium specimens, digitization, and the CCH2 data portal are now regularly highlighted and/or used in several undergraduate courses at multiple universities. The CAP TCN also led 20 citizen science ?WeDigBio? events with over 700 participants and one intensive phenology workshop with 20 participants. 

Overall this project has advanced our understanding of California plants and provided education and training to students and the public of California. It has enabled institutions in California to continue doing research on plant collections to advance our understanding the biodiversity of the state.


Last Modified: 09/26/2023
Modified by: Jennifer M Yost

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