Award Abstract # 1756859
Collaborative Research: Molecular profiling of the ecophysiology of dormancy induction in calanid copepods of the Northern Gulf of Alaska LTER site

NSF Org: OCE
Division Of Ocean Sciences
Recipient: UNIVERSITY OF ALASKA FAIRBANKS
Initial Amendment Date: January 31, 2018
Latest Amendment Date: January 31, 2018
Award Number: 1756859
Award Instrument: Standard Grant
Program Manager: Cynthia Suchman
csuchman@nsf.gov
 (703)292-2092
OCE
 Division Of Ocean Sciences
GEO
 Directorate for Geosciences
Start Date: March 1, 2018
End Date: August 31, 2023 (Estimated)
Total Intended Award Amount: $441,122.00
Total Awarded Amount to Date: $441,122.00
Funds Obligated to Date: FY 2018 = $441,122.00
History of Investigator:
  • Russell Hopcroft (Principal Investigator)
    rrhopcroft@alaska.edu
Recipient Sponsored Research Office: University of Alaska Fairbanks Campus
2145 N TANANA LOOP
FAIRBANKS
AK  US  99775-0001
(907)474-7301
Sponsor Congressional District: 00
Primary Place of Performance: University of Alaska Fairbanks
PO Box 757880
Fairbanks
AK  US  99775-7880
Primary Place of Performance
Congressional District:
00
Unique Entity Identifier (UEI): FDLEQSJ8FF63
Parent UEI:
NSF Program(s): BIOLOGICAL OCEANOGRAPHY
Primary Program Source: 01001819DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 9117, 9150, 1195, 1174
Program Element Code(s): 165000
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.050

ABSTRACT

The sub-arctic Pacific sustains major fisheries with nearly all commercially important species depending either directly or indirectly on lipid-rich copepods (Neocalanus flemingeri, Neocalanus plumchrus, Neocalanus cristatus and Calanus marshallae). In turn, these species depend on a short-lived spring algal bloom for growth and the accumulation of lipid stores in order to complete an annual life cycle that includes a period of dormancy. The intellectual thrust of this project measures how the timing and magnitude of algal blooms affect preparation for dormancy using a combination of field and experimental observations. The Northern Gulf of Alaska - with four calanid species that experience dormancy, steep environmental gradients, well-described phytoplankton bloom dynamics, and a concurrent NSF-LTER program - provides an unusual opportunity to identify the factors that affect dormancy preparation. Education and outreach plans are integrated with the research. Educational efforts focus on interdisciplinary opportunities for undergraduate, graduate and post-doctoral trainees. The project will generate content for existing graduate and undergraduate courses. U. of Alaska Fairbanks and U. Hawaii at Manoa are Alaska Native and Native Hawaiian Serving Institutions, and students from these groups will be recruited to participate in the project. Because fishing is a major industry in the Gulf of Alaska, outreach will communicate the role copepods play in marine ecosystems using the concept of a dynamic food web tied to production cycles.


Diapause (dormancy) and the accompanying accumulation of lipids in copepods have been identified as key drivers in high latitude ecosystems that support economically important fisheries, including those of the Gulf of Alaska. While the disappearance of lipid-rich copepods has been linked to severe declines in fish stocks, little is known about the environmental conditions that are required for the successful completion of the copepod's life cycle. A physiological profiling approach that measures relative gene expression will be used to test two alternative hypotheses: the lipid accumulation window hypothesis, which holds that individuals enter diapause only after they have accumulated sufficient lipid stores, and the developmental program hypothesis, which holds that once the diapause program is activated, progression occurs independent of lipid accumulation. The specific objectives are: 1) determine the effect of food levels during N. flemingeri copepodite stages on progression towards diapause using multiple physiological and developmental markers; 2) characterize the seasonal changes in the physiological profile of N. flemingeri across environmental gradients and across years; 3) compare physiological profiles across co-occurring calanid species (N. flemingeri, Neocalanus plumchrus, Neocalanus cristatus and Calanus marshallae); and 4) estimate the reproductive potential of the overwintering populations of N. flemingeri. The broader scientific significance includes the acquisition of new genomic data and molecular resources that will be made publicly available through established data repositories, and the development of new tools for routinely obtaining physiological profiles of copepods.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Hartline, Daniel K. and Cieslak, Matthew C. and Castelfranco, Ann M. and Lieberman, Brandon and Roncalli, Vittoria and Lenz, Petra H. "De novo transcriptomes of six calanoid copepods (Crustacea): a resource for the discovery of novel genes" Scientific Data , v.10 , 2023 https://doi.org/10.1038/s41597-023-02130-1 Citation Details
Monell, K.J. "Post-diapause DNA replication during oogenesis in a capital-breeding copepod" Integrative organismal biology , v.5 , 2023 Citation Details
Roncalli, Vittoria and Cieslak, Matthew C and Castelfranco, Ann M and Hopcroft, Russell R and Hartline, Daniel K and Lenz, Petra H "Post-diapause transcriptomic restarts: insight from a high-latitude copepod" BMC Genomics , v.22 , 2021 https://doi.org/10.1186/s12864-021-07557-7 Citation Details
Roncalli, Vittoria and Niestroy, Jeanette and Cieslak, Matthew C. and Castelfranco, Ann M. and Hopcroft, Russell R. and Lenz, Petra H. "Physiological acclimatization in highlatitude zooplankton" Molecular Ecology , v.31 , 2022 https://doi.org/10.1111/mec.16354 Citation Details

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

At latitudes that undergo significant seasonal variation in productivity, some zooplankton species such as copepods undergo a period of hibernation called diapause to get through periods of low productivity.  Species often hide in cold water at great depth during diapause both to reduce the risk of predation and further reduce their metabolic rates. Although metabolic rates are low during diapause, copepods must rely on lipids stored in a specialized storage sac to fuel their hibernation. Thus, the amount of lipid stored and the factors that trigger diapause are important aspects of their life history.  Lipid storage is doubly important in Neocalnaus copepods because unlike most diapausing species the female does not feed after diapause and she must also fuel her entire reproductive output from the lipids she carries into diapause.

In this collaborative proposal between Petra Lenz from the University of Hawaii at Manoa, and Russ Hopcroft at the University of Alaska Fairbanks, we combined molecular profiling approaches with more classic empirical studies to understand the lead-up to diapause and the factors that trigger it.  Of the two alternative diapause hypotheses - the lipid accumulation window hypothesis, which holds that individuals enter diapause only after they have accumulated sufficient lipid stores, and the developmental program hypothesis, which holds that once the diapause program is activated, progression occurs independent of lipid accumulation - we found most support for the former. The specific project objectives were to: 1) determine the effect of food levels during Neocalanus flemingeri copepodite stages on progression towards diapause using multiple physiological and developmental markers; 2) characterize the seasonal changes in the physiological profile of Neocalanus flemingeri across environmental gradients and across years; 3) compare physiological profiles across co-occurring calanid species; and 4) estimate the reproductive potential of the overwintering populations of N. flemingeri.  Three graduate students and several post-doctoral fellows participated in this project.  A total of 8 peer-reviewed articles were published.  The broader scientific significance includes the acquisition of new genomic data and molecular resources made publicly available through established data repositories, and the development of new tools for routinely obtaining physiological profiles of copepods. 


Last Modified: 07/09/2024
Modified by: Russell R Hopcroft

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