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Award Abstract # 1658030
Collaborative Research: Direct Characterization of Adaptive Nutrient Stress Responses in the Sargasso Sea using Protein Biomarkers and a Biogeochemical AUV

NSF Org: OCE
Division Of Ocean Sciences
Recipient: WOODS HOLE OCEANOGRAPHIC INSTITUTION
Initial Amendment Date: March 15, 2017
Latest Amendment Date: March 15, 2017
Award Number: 1658030
Award Instrument: Standard Grant
Program Manager: Simone Metz
OCE
 Division Of Ocean Sciences
GEO
 Directorate for Geosciences
Start Date: March 15, 2017
End Date: February 29, 2020 (Estimated)
Total Intended Award Amount: $565,683.00
Total Awarded Amount to Date: $565,683.00
Funds Obligated to Date: FY 2017 = $565,683.00
History of Investigator:
  • Mak Saito (Principal Investigator)
    msaito@whoi.edu
  • Michael Jakuba (Co-Principal Investigator)
Recipient Sponsored Research Office: Woods Hole Oceanographic Institution
266 WOODS HOLE RD
WOODS HOLE
MA  US  02543-1535
(508)289-3542
Sponsor Congressional District: 09
Primary Place of Performance: Woods Hole Oceanographic Institution
266 Woods Hole Rd.
Woods Hole
MA  US  02543-1050
Primary Place of Performance
Congressional District:
09
Unique Entity Identifier (UEI): GFKFBWG2TV98
Parent UEI:
NSF Program(s): Chemical Oceanography
Primary Program Source: 01001718DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 1680, 4444
Program Element Code(s): 167000
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.050

ABSTRACT

Microscopic communities in the ocean can be surprisingly diverse. This diversity makes it difficult to study the individual organisms and reactions that control specific reactions controlling nutrient cycles. Past studies confirm that iron and nitrogen are vital elements for biological growth. There is increasing evidence, however, that other chemicals such as silica, zinc, cobalt, and vitamin B12 may be just as important. This project will provide an unprecedented view of community distributions using new molecular methods to isolate and link active proteins to specific chemical cycles during the very first research deployment of a brand-new autonomous underwater vehicle (AUV). The AUV will collect samples in programed patterns by pumping water directly into its filtering mechanism and then return the samples to the ship for analysis. The Bermuda Atlantic Time-series Study (BATS) station, which provides abundant supporting data, is the site for this innovative investigation into the microbial ecology and chemistry of the open oceans. Additionally, data will be widely distributed to other scientists through the Ocean Protein Portal website being developed by the Woods Hole Oceanographic Institute (WHOI) and the Biological and Chemical Oceanography Data Management Office. Data will also contribute a new teaching module in the Marine Bioinorganic Chemistry course at WHOI.

This first scientific deployment of the newly engineered and constructed biogeochemical AUV, Clio, will generate a novel dataset to examine marine microbial biogeochemical cycles in the Northwestern Atlantic oligotrophic ocean in unprecedented detail and at high vertical resolution. First the project proposes to understand if the microbial community reflects the varying chemical composition and cyanobacterial species through nutrient response adaptations. Additionally, the research will determine if iron stress in the low light Prochlorococcus ecotyope found in the deep chlorophyll maximum is a persistent feature influenced by seasonal dust fluxes. The highly resolved vertical data from the in situ pumping capabilities of Clio are fundamental to a rigorous examination of these biogeochemical questions. This highly transformative dataset will greatly advance understanding of the nutrient and trace element cycling of this region and will be the first field validation of the potentially revolutionary capability these new approaches represent for the study of marine microbial biogeochemistry.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 13)
Bender, Sara J. and Moran, Dawn M. and McIlvin, Matthew R. and Zheng, Hong and McCrow, John P. and Badger, Jonathan and DiTullio, Giacomo R. and Allen, Andrew E. and Saito, Mak A. "Colony formation in <i>Phaeocystis antarctica</i>: connecting molecular mechanisms with iron biogeochemistry" Biogeosciences , v.15 , 2018 https://doi.org/10.5194/bg-15-4923-2018 Citation Details
Cohen, Natalie R and Gong, Weida and Moran, Dawn M. and McIlvin, Matthew R. and Saito, Mak A. and Marchetti, Adrian "Transcriptomic and proteomic responses of the oceanic diatom Pseudo-nitzschia granii to iron limitation: Intracellular processes of an iron-limited diatom" Environmental Microbiology , v.20 , 2018 10.1111/1462-2920.14386 Citation Details
Hawco, Nicholas J. and McIlvin, Matthew M. and Bundy, Randelle M. and Tagliabue, Alessandro and Goepfert, Tyler J. and Moran, Dawn M. and Valentin-Alvarado, Luis and DiTullio, Giacomo R. and Saito, Mak A. "Minimal cobalt metabolism in the marine cyanobacterium Prochlorococcus" Proceedings of the National Academy of Sciences , 2020 https://doi.org/10.1073/pnas.2001393117 Citation Details
Hawco, Nicholas J. and Saito, Mak A. "Competitive inhibition of cobalt uptake by zinc and manganese in a pacific Prochlorococcus strain: Insights into metal homeostasis in a streamlined oligotrophic cyanobacterium" Limnology and Oceanography , v.63 , 2018 10.1002/lno.10935 Citation Details
Held, Noelle A. and Webb, Eric A. and McIlvin, Matthew M. and Hutchins, David A. and Cohen, Natalie R. and Moran, Dawn M. and Kunde, Korinna and Lohan, Maeve C. and Mahaffey, Claire and Woodward, E. Malcolm and Saito, Mak A. "Co-occurrence of Fe and P stress in natural populations of the marine diazotroph <i>Trichodesmium</i>" Biogeosciences , v.17 , 2020 https://doi.org/10.5194/bg-17-2537-2020 Citation Details
Held, Noelle and Saunders, Jaclyn and Futrelle, Joe and Saito, Mak "Harnessing the Power of Scientific Python to Investigate Biogeochemistry and Metaproteomes of the Central Pacific Ocean" Proceedings of the Python in Science Conference , 2018 10.25080/Majora-4af1f417-010 Citation Details
Kellogg, Riss M. and McIlvin, Matthew R. and Vedamati, Jagruti and Twining, Benjamin S. and Moffett, James W. and Marchetti, Adrian and Moran, Dawn M. and Saito, Mak A. "Efficient zinc/cobalt interreplacement in northeast Pacific diatoms and relationship to high surface dissolved Co : Zn ratios" Limnology and Oceanography , v.65 , 2020 https://doi.org/10.1002/lno.11471 Citation Details
Lee, Michael D. and Ahlgren, Nathan A. and Kling, Joshua D. and Walworth, Nathan G. and Rocap, Gabrielle and Saito, Mak A. and Hutchins, David A. and Webb, Eric A. "Marine Synechococcus isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content" Environmental Microbiology , v.21 , 2019 https://doi.org/10.1111/1462-2920.14552 Citation Details
Mazzotta, Michael G. and McIlvin, Matthew R. and Saito, Mak A. "Characterization of the Fe metalloproteome of a ubiquitous marine heterotroph, Pseudoalteromonas (BB2-AT2): multiple bacterioferritin copies enable significant Fe storage" Metallomics , v.12 , 2020 https://doi.org/10.1039/d0mt00034e Citation Details
Saito, Mak A. and Bertrand, Erin M. and Duffy, Megan E. and Gaylord, David A. and Held, Noelle A. and Hervey, William Judson and Hettich, Robert L. and Jagtap, Pratik and Janech, Michael G. and Kinkade, Danie B. and Leary, Dasha and McIlvin, Matthew and M "Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing" Journal of Proteome Research , 2019 10.1021/acs.jproteome.8b00761 Citation Details
Saito, Mak A. and McIlvin, Matthew R. and Moran, Dawn M. and Santoro, Alyson E. and Dupont, Chris L. and Rafter, Patrick A. and Saunders, Jaclyn K. and Kaul, Drishti and Lamborg, Carl H. and Westley, Marian and Valois, Frederica and Waterbury, John B. "Abundant nitrite-oxidizing metalloenzymes in the mesopelagic zone of the tropical Pacific Ocean" Nature Geoscience , v.13 , 2020 10.1038/s41561-020-0565-6 Citation Details
(Showing: 1 - 10 of 13)

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

In this project we successfully studied the proteins produced by microbial community in the North Atlantic Ocean using metaproteomic samples collected by the new autonomous underwater vehicle (AUV) Clio. Clio is the first AUV designed specifically for studying ocean biogeochemistry - the integrated study of elemental cycles and the influence of biology, chemistry and geological processes on them. With support from this project, Clio has completed nearly 30 dives to date, dived to more than 4000m depth, and collected thousands of samples. The analysis of the proteins from microbes collected on these expeditions showed the presence of sophisticated biochemical systems deployed in response to nutrient and micronutrient scarcity and the export of organic matter. On the Bermuda Atlantic Time Series expeditions, Clio typically conducted three dives per cruise, including acquiring high resolution vertical profiles through the chlorophyll maximum with 5m resolution. The metaproteomic datasets from the Clio expeditions have yielded surprising and important insights into the biogeochemical processes occuring in the North Atlantic oligotrophic gyre. In the euphotic zone, a layering of nutrient stressors is evident, and that seasonal deepening of the thermocline is represented within the nitrogen and phosphorus transporters and element sparing systems becoming more prevalent through the summer period. In contrast, within the chlorophyll maximum iron stress proteins become increasingly pronounced, which is surprising in the heavy dust deposition Atlantic environment, but indicates isolation of the chlorophyll maximum from surface waters. In addition transporters for organic forms of these nutrients is seen within all of these profiles, implying DON and DOP sources are key to this ecosystem's functioning. Together these results imply a layering of multiple nutrient stressors, rather than typical model parameterizations for productivity control by single nutrient limitation. This project contributed to the development of technology for AUV sampling, improvements in methods for measurement of ocean proteins using metaproteomic mass spectrometry analyses, and broader impact efforts including submissions and upgrades to the Ocean Protein Portal for ocean biochemical research and education and to the training of a graduate student and postdoc. 

 


Last Modified: 07/09/2020
Modified by: Mak A Saito

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