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Award Abstract # 1656063
Research Coordination Network (RCN): Predicting vertebrate responses to a changing climate: modeling genomes to phenomes to populations (G2P2PoP)

NSF Org: IOS
Division Of Integrative Organismal Systems
Recipient: NORTHERN ARIZONA UNIVERSITY
Initial Amendment Date: July 27, 2017
Latest Amendment Date: April 8, 2019
Award Number: 1656063
Award Instrument: Standard Grant
Program Manager: Keith Reinhardt
kreinhar@nsf.gov
 (703)292-4854
IOS
 Division Of Integrative Organismal Systems
BIO
 Directorate for Biological Sciences
Start Date: September 1, 2017
End Date: August 31, 2023 (Estimated)
Total Intended Award Amount: $500,000.00
Total Awarded Amount to Date: $500,000.00
Funds Obligated to Date: FY 2017 = $500,000.00
History of Investigator:
  • Charles Buck (Principal Investigator)
    Loren.Buck@nau.edu
  • Allyson Hindle (Co-Principal Investigator)
  • Nika Galic (Co-Principal Investigator)
Recipient Sponsored Research Office: Northern Arizona University
601 S KNOLES DR RM 220
FLAGSTAFF
AZ  US  86011
(928)523-0886
Sponsor Congressional District: 02
Primary Place of Performance: Northern Arizona University
617 S Beaver St
FLAGSTAFF
AZ  US  86011-0001
Primary Place of Performance
Congressional District:
02
Unique Entity Identifier (UEI): MXHAS3AKPRN1
Parent UEI:
NSF Program(s): Integrtv Ecological Physiology
Primary Program Source: 01001718DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 1664, 9179
Program Element Code(s): 765700
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

A grand challenge in biology is developing an understanding of the mechanistic interrelationships among genes, environment, and phenotype, and how these interactions emerge at the population level. This project involves establishing a research coordination network, to bring together scientists from mathematical modeling and biological fields to develop multilevel mechanistic models that integrate existing and new data to predict responses by vertebrates to environmental change-related stressors. Specific goals include the creation of an initial core network of participants with expertise either at different levels of biological complexity and/or at creating and using mathematical models, expansion of the original network with special emphasis in recruiting young scientists, hosting workshops to foster education and formation of new interdisciplinary collaborations, training through exchanges between labs, and development and dissemination of webinars derived from the workshops. Scientific, regional, gender and ethnic diversity of the participants will broaden participation and expose participants to diverse social and scientific cultures. Of the initial participants, eight nations are represented, about half are early career, over half are female, and many are members of under-represented groups in science. Through the synthesis of empirical science and modeling, new knowledge can be generated and used to inform key stakeholders including policymakers, land managers, and the general public. The project will recruit secondary school teachers for training and development of curricular modules for incorporation into high school science programs through teacher outreach, develop webinars for public education resources, and create webinars for use by researchers.

This research coordination network will address a grand challenge in biology, 'Deciphering the Genomes-to-Phenomes (G2P) Relationship' with extension to the population level. This understanding is essential for predicting animal resilience and vulnerability to rapid environmental change.  Participant expertise will span from genomes to populations and will include quantitative modelers at all levels of biological organization. Primary activities include annual workshops to foster discussion and interaction among mathematical modelers and organismal scientists.  Each workshop will include interactive lectures by experts within a topic area, followed by discussion of modeling approaches, and limitations and opportunities within and across levels of biological organization. Next will be communication of new techniques and approaches to generation of biological data and modeling, followed by planning sessions for new collaborations and funding opportunities.  Webinars will be organized to train participants in mechanistic modeling of biological systems across levels.  Collaborations in research and generation of manuscripts and proposals will be facilitated through investment in cross-disciplinary exchanges of network participants. A website will be established with a discussion board for in-depth discourse and collaboration among members. The website will serve as a repository for descriptions of participant expertise and activities, as well as reports of each workshop, with video presentations by the expert speakers.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Del Giudice, Marco and Buck, C Loren and Chaby, Lauren E and Gormally, Brenna M and Taff, Conor C and Thawley, Christopher J and Vitousek, Maren N and Wada, Haruka "What Is Stress? A Systems Perspective" Integrative and Comparative Biology , 2018 10.1093/icb/icy114 Citation Details
Fanter, Cornelia and Madelaire, Carla and Genereux, Diane P. and van Breukelen, Frank and Levesque, Danielle and Hindle, Allyson "Epigenomics as a paradigm to understand the nuances of phenotypes" Journal of Experimental Biology , v.225 , 2022 https://doi.org/10.1242/jeb.243411 Citation Details
Galic, N and Hindle, AG and De Long, JP and Watabe, K and Forbes, VE and Buck, CL "Modeling genomes to phenomes to populations in a changing climate: the need for collaborative networks" Ecological Modelling , v.406 , 2019 10.1016/j.ecolmodel.2019.05.014 Citation Details
Hanson, Haley E. and Liebl, Andrea L. "The Mutagenic Consequences of DNA Methylation within and across Generations" Epigenomes , v.6 , 2022 https://doi.org/10.3390/epigenomes6040033 Citation Details
Hanson, Haley E. and Zimmer, Cedric and Koussayer, Bilal and Schrey, Aaron W. and Maddox, J. Dylan and Martin, Lynn B. "Epigenetic potential affects immune gene expression in house sparrows" Journal of Experimental Biology , v.224 , 2021 https://doi.org/10.1242/jeb.238451 Citation Details
Jordan-Ward, Renee and von Hippel, Frank A. and Wilson, Catherine A. and Rodriguez Maldonado, Zyled and Dillon, Danielle and Contreras, Elise and Gardell, Alison and Minicozzi, Michael R. and Titus, Tom and Ungwiluk, Bobby and Miller, Pamela and Carpenter "Differential gene expression and developmental pathologies associated with persistent organic pollutants in sentinel fish in Troutman Lake, Sivuqaq, Alaska" Environmental Pollution , v.340 , 2024 https://doi.org/10.1016/j.envpol.2023.122765 Citation Details
Verdonen, Mariana and Berner, Logan T and Forbes, Bruce C and Kumpula, Timo "Periglacial vegetation dynamics in Arctic Russia: decadal analysis of tundra regeneration on landslides with time series satellite imagery" Environmental Research Letters , v.15 , 2020 https://doi.org/10.1088/1748-9326/abb500 Citation Details

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

The primary goal of the g2p2pop RCN was to establish a new collaborative network spanning from genomes to populations to facilitate development of novel quantitative approaches to address the urgent challenge of predicting how vertebrate species and populations will respond to a changing climate. To accomplish this, we hosted six in-person workshops, supported 36 laboratory exchanges, and developed educational outreach products. Over the course of this award, the g2p2pop network grew from 7 US members to >350 active members from >20 countries. Collectively, our activities with the g2p2pop RCN has broadened participation in STEM, facilitated science education, established new collaborations and collaborative products, and facilitated a global learning and research community.

Workshops included participation of >200 scientists, many of whom are underrepresented in STEM and most were graduate students/early career researchers. Other Workshop participants included 41 established researchers, who presented lectures and engageed with other workshop participants,and public school administrators and educators. Their engagement in the workshops and with other network participants facilitated the development of the Educational Modules and enabled the recordings of the mini-interviews. 

Laboratory Exchanges were established to 1) enhance research and training opportunities for early career scientists, 2) increase research output for early career scientists, 3) promote multiinstitutional and interdisciplinary collaboration, and 4) broaden participation of underrepresented minorities in STEM. 

Education and Outreach activities included development of Educational Modules and Mini-Interviews and maintenance of a g2p2pop website and social media presence. A  total of 25 high school science teachers and 3 additional education professionals (who provide training and professional development services to teachers) participated in RCN workshops and contributed to the development of educational outreach products. Although educators participated in all of the in-person workshops, the focus point for educator participation was the Las Vegas workshop, where teachers representing 18 different high schools in Clark County School District collaborated with researchers throughout the workshop.

 

 


Last Modified: 04/01/2024
Modified by: Charles L Buck

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