Award Abstract # 1636893
BD Spokes: SPOKE: MIDWEST: Collaborative: Advanced Computational Neuroscience Network (ACNN)
NSF Org: |
IIS
Division of Information & Intelligent Systems
|
Recipient: |
TRUSTEES OF INDIANA UNIVERSITY
|
Initial Amendment Date:
|
September 7, 2016 |
Latest Amendment Date:
|
October 15, 2020 |
Award Number: |
1636893 |
Award Instrument: |
Standard Grant |
Program Manager: |
Alejandro Suarez
alsuarez@nsf.gov
(703)292-7092
IIS
Division of Information & Intelligent Systems
CSE
Directorate for Computer and Information Science and Engineering
|
Start Date: |
September 1, 2016 |
End Date: |
October 31, 2021 (Estimated) |
Total Intended Award
Amount: |
$332,869.00 |
Total Awarded Amount to
Date: |
$399,069.00 |
Funds Obligated to Date:
|
FY 2016 = $332,609.00
FY 2020 = $66,200.00
|
History of Investigator:
|
-
Franco
Pestilli
(Principal Investigator)
pestilli@utexas.edu
-
Olaf
Sporns
(Co-Principal Investigator)
-
Andrew
Saykin
(Co-Principal Investigator)
-
Lei
Wang
(Co-Principal Investigator)
|
Recipient Sponsored Research
Office: |
Indiana University
107 S INDIANA AVE
BLOOMINGTON
IN
US
47405-7000
(317)278-3473
|
Sponsor Congressional
District: |
09
|
Primary Place of
Performance: |
Indiana University
IN
US
47401-3654
|
Primary Place of
Performance Congressional District: |
09
|
Unique Entity Identifier
(UEI): |
YH86RTW2YVJ4
|
Parent UEI: |
|
NSF Program(s): |
BD Spokes -Big Data Regional I, IntgStrat Undst Neurl&Cogn Sys
|
Primary Program Source:
|
01001617DB NSF RESEARCH & RELATED ACTIVIT
01002021DB NSF RESEARCH & RELATED ACTIVIT
|
Program Reference
Code(s): |
028Z,
7433,
8083,
8089,
8091
|
Program Element Code(s):
|
024Y00,
862400
|
Award Agency Code: |
4900
|
Fund Agency Code: |
4900
|
Assistance Listing
Number(s): |
47.070
|
ABSTRACT

Novel neuroscience tools and techniques are necessary to enable insight into the building blocks of neural circuits, the interactions between these circuits that underpin the functions of the human brain, and modulation of these circuits that affect our behavior. To leverage rapid technological development in sensing, imaging, and data analysis new ground breaking advances in neuroscience are necessary to facilitate knowledge discovery using data science methods. To address this societal grand challenge, the project will foster new interdisciplinary collaborations across computing, biological, mathematical, and behavioral science disciplines together with partnerships in academia, industry, and government at multiple levels. The Big Data Neuroscience Spoke titled Midwest: Advanced Computational Neuroscience Network (ACNN) is strongly aligned with the national priority area of neuroscience and brings together a diverse set of committed regional partners to enable the Midwest region to realize the promise of Big Data for neuroscience. The ACNN Spoke will build broad consensus on the core requirements, infrastructure, and components needed to develop a new generation of sustainable interdisciplinary Neuroscience Big Data research. ACNN will leverage the strengths and resources in the Midwest region to increase innovation and collaboration for the understanding of the structure, physiology, and function of the human brain through partnerships and services in education, tools, and best practices.
The ACNN will design, pilot and support powerful neuroscientific computational resources for high-throughput, collaborative, and service-oriented data aggregation, processing and open-reproducible science. The ACNN Spoke framework will address three specific problems related to neuroscience Big Data: (1) data capture, organization, and management involving multiple centers and research groups, (2) quality assurance, preprocessing and analysis that incorporates contextual metadata, and (3) data communication to software and hardware computational resources that can scale with the volume, velocity, and variety of neuroscience datasets. The ACNN will build a sustainable ecosystem of neuroscience community partners in both academia and industry using existing technologies for collaboration and virtual meeting together with face-to-face group meetings. The planned activities of the ACNN Spoke will also allow the Midwest Big Data Hub to disseminate additional Big Data technologies resources to the neuroscience community, including access to supercomputing facilities, best practices, and platforms.
This award received co-funding from CISE Divisions of Advanced Cyberinfrastructure (ACI) and Information and Intelligent Systems (IIS).
PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 32)
(Showing: 1 - 32 of 32)
Ahmadi, Khazar and Fracasso, Alessio and Puzniak, Robert J. and Gouws, Andre D. and Yakupov, Renat and Speck, Oliver and Kaufmann, Joern and Pestilli, Franco and Dumoulin, Serge O. and Morland, Antony B. and Hoffmann, Michael B.
"Triple visual hemifield maps in a case of optic chiasm hypoplasia"
NeuroImage
, v.215
, 2020
https://doi.org/10.1016/j.neuroimage.2020.116822
Citation
Details
Avesani, Paolo and McPherson, Brent and Hayashi, Soichi and Caiafa, Cesar F. and Henschel, Robert and Garyfallidis, Eleftherios and Kitchell, Lindsey and Bullock, Daniel and Patterson, Andrew and Olivetti, Emanuele and Sporns, Olaf and Saykin, Andrew J. a
"The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services"
Scientific Data
, v.6
, 2019
10.1038/s41597-019-0073-y
Citation
Details
Babo-Rebelo, M and Puce, A and Bullock, D and Hugueville, L and Pestilli, F and Adam, C and Lehongre, K and Lambrecq, V and Dinkelacker, V and George, N
"Visual Information Routes in the Posterior Dorsal and Ventral Face Network Studied with Intracranial Neurophysiology and White Matter Tract Endpoints"
Cerebral Cortex
, 2021
https://doi.org/10.1093/cercor/bhab212
Citation
Details
Berto, Giulia and Avesani, Paolo and Pestilli, Franco and Bullock, Daniel and Caron, Bradley and Olivetti, Emanuele
"Anatomically-Informed Multiple Linear Assignment Problems for White Matter Bundle Segmentation"
ISBI
, 2019
10.1109/ISBI.2019.8759174
Citation
Details
Bullock, Daniel and Takemura, Hiromasa and Caiafa, Cesar F. and Kitchell, Lindsey and McPherson, Brent and Caron, Bradley and Pestilli, Franco
"Associative white matter connecting the dorsal and ventral posterior human cortex"
Brain Structure and Function
, 2019
10.1007/s00429-019-01907-8
Citation
Details
Caiafa, Cesar F and Cichocki, A and Pestilli, Franco
"A Sparse Tensor Decomposition with Multi-Dictionary Learning Applied to Diffusion Brain Imaging"
SPARS
, 2017
Citation
Details
Caiafa, Cesar F and Sporns, Olaf and Saykin, Andrew J and Pestilli, Franco
"Unified representation of tractography and diffusion-weighted MRI data using sparse multidimensional arrays"
Neural Information Processing - Letters and Reviews
, 2017
Citation
Details
Caron, Bradley and Stuck, Ricardo and McPherson, Brent and Bullock, Daniel and Kitchell, Lindsey and Faskowitz, Joshua and Kellar, Derek and Cheng, Hu and Newman, Sharlene and Port, Nicholas and Pestilli, Franco
"Collegiate athlete brain data for white matter mapping and network neuroscience"
Scientific Data
, v.8
, 2021
https://doi.org/10.1038/s41597-021-00823-z
Citation
Details
Chandio, Bramsh Qamar and Risacher, Shannon Leigh and Pestilli, Franco and Bullock, Daniel and Yeh, Fang-Cheng and Koudoro, Serge and Rokem, Ariel and Harezlak, Jaroslaw and Garyfallidis, Eleftherios
"Bundle analytics, a computational framework for investigating the shapes and profiles of brain pathways across populations"
Scientific Reports
, v.10
, 2020
https://doi.org/10.1038/s41598-020-74054-4
Citation
Details
Cheng, Hu and Vinci-Booher, Sophia and Wang, Jian and Caron, Bradley and Wen, Qiuting and Newman, Sharlene and Pestilli, Franco
"Denoising diffusion weighted imaging data using convolutional neural networks"
PLOS ONE
, v.17
, 2022
https://doi.org/10.1371/journal.pone.0274396
Citation
Details
Echevarria-Cooper, Shiloh L. and Zhou, Guangyu and Zelano, Christina and Pestilli, Franco and Parrish, Todd B. and Kahnt, Thorsten
"Mapping the Microstructure and Striae of the Human Olfactory Tract with Diffusion MRI"
The Journal of Neuroscience
, v.42
, 2022
https://doi.org/10.1523/JNEUROSCI.1552-21.2021
Citation
Details
Eke, Damian O. and Bernard, Amy and Bjaalie, Jan G. and Chavarriaga, Ricardo and Hanakawa, Takashi and Hannan, Anthony J. and Hill, Sean L. and Martone, Maryann E. and McMahon, Agnes and Ruebel, Oliver and Crook, Sharon and Thiels, Edda and Pestilli, Fran
"International data governance for neuroscience"
Neuron
, v.110
, 2022
https://doi.org/10.1016/j.neuron.2021.11.017
Citation
Details
Glozman, Tanya and Bruckert, Lisa and Pestilli, Franco and Yecies, Derek W. and Guibas, Leonidas J. and Yeom, Kristen W.
"Framework for shape analysis of white matter fiber bundles"
NeuroImage
, v.167
, 2018
10.1016/j.neuroimage.2017.11.052
Citation
Details
Hanekamp, Sandra and uri-Blake, Branislava and Caron, Bradley and McPherson, Brent and Timmer, Anneleen and Prins, Doety and Boucard, Christine C. and Yoshida, Masaki and Ida, Masahiro and Hunt, David and Jansonius, Nomdo M. and Pestilli, Franco and Co
"White matter alterations in glaucoma and monocular blindness differ outside the visual system"
Scientific Reports
, v.11
, 2021
https://doi.org/10.1038/s41598-021-85602-x
Citation
Details
Kaneko, Takaaki and Takemura, Hiromasa and Pestilli, Franco and Silva, Afonso C. and Ye, Frank Q. and Leopold, David A.
"Spatial organization of occipital white matter tracts in the common marmoset"
Brain Structure and Function
, 2020
10.1007/s00429-020-02060-3
Citation
Details
Kellar, Derek and Newman, Sharlene and Pestilli, Franco and Cheng, Hu and Port, Nicholas L.
"Comparing fMRI activation during smooth pursuit eye movements among contact sport athletes, non-contact sport athletes, and non-athletes"
NeuroImage: Clinical
, v.18
, 2018
10.1016/j.nicl.2018.01.025
Citation
Details
Kitchell, L and Bullock, D and Hayashi, S and Pestilli, F
"Shape Analysis of White Matter Tracts via the Laplace-Beltrami Spectrum"
MICCAI SHAPEMI
, 2018
Citation
Details
Kumar, Sawan and Pestilli, Franco and Sreenivasan, Varsha and Talukdar, Partha and Sridharan, Devarajan
"ReAl-LiFE: Accelerating the Discovery of Individualized Brain Connectomes on GPUs"
Association for the Advancement of Artificial Intelligence
, 2019
Citation
Details
Main, Keith L. and Soman, Salil and Pestilli, Franco and Furst, Ansgar and Noda, Art and Hernandez, Beatriz and Kong, Jennifer and Cheng, Jauhtai and Fairchild, Jennifer K. and Taylor, Joy and Yesavage, Jerome and Wesson Ashford, J. and Kraemer, Helena an
"DTI measures identify mild and moderate TBI cases among patients with complex health problems: A receiver operating characteristic analysis of U.S. veterans"
NeuroImage: Clinical
, v.16
, 2017
10.1016/j.nicl.2017.06.031
Citation
Details
McPherson, Brent C. and Pestilli, Franco
"A single mode of population covariation associates brain networks structure and behavior and predicts individual subjects age"
Communications Biology
, v.4
, 2021
https://doi.org/10.1038/s42003-021-02451-0
Citation
Details
Pestilli, Franco
"Human white matter and knowledge representation"
PLOS Biology
, v.16
, 2018
10.1371/journal.pbio.2005758
Citation
Details
Puzniak, Robert J. and McPherson, Brent and Ahmadi, Khazar and Herbik, Anne and Kaufmann, Jörn and Liebe, Thomas and Gouws, Andre and Morland, Antony B. and Gottlob, Irene and Hoffmann, Michael B. and Pestilli, Franco
"CHIASM, the human brain albinism and achiasma MRI dataset"
Scientific Data
, v.8
, 2021
https://doi.org/10.1038/s41597-021-01080-w
Citation
Details
Rheault, Francois and De Benedictis, Alessandro and Daducci, Alessandro and Maffei, Chiara and Tax, Chantal M. and Romascano, David and Caverzasi, Eduardo and Morency, Felix C. and Corrivetti, Francesco and Pestilli, Franco and Girard, Gabriel and Theaud,
"Tractostorm: The what, why, and how of tractography dissection reproducibility"
Human Brain Mapping
, v.41
, 2020
https://doi.org/10.1002/hbm.24917
Citation
Details
Rokem, Ariel and Takemura, Hiromasa and Bock, Andrew S. and Scherf, K. Suzanne and Behrmann, Marlene and Wandell, Brian A. and Fine, Ione and Bridge, Holly and Pestilli, Franco
"The visual white matter: The application of diffusion MRI and fiber tractography to vision science"
Journal of Vision
, v.17
, 2017
10.1167/17.2.4
Citation
Details
Rossini, P.M. and Di Iorio, R. and Bentivoglio, M. and Bertini, G. and Ferreri, F. and Gerloff, C. and Ilmoniemi, R.J. and Miraglia, F. and Nitsche, M.A. and Pestilli, F. and Rosanova, M. and Shirota, Y. and Tesoriero, C. and Ugawa, Y. and Vecchio, F. and
"Methods for analysis of brain connectivity: An IFCN-sponsored review"
Clinical Neurophysiology
, v.130
, 2019
10.1016/j.clinph.2019.06.006
Citation
Details
Sani, Ilaria and McPherson, Brent C and Stemmann, Heiko and Pestilli, Franco and Freiwald, Winrich A
"Functionally defined white matter of the macaque monkey brain reveals a dorso-ventral attention network"
eLife
, v.8
, 2019
10.7554/eLife.40520
Citation
Details
Sani, Ilaria and Stemmann, Heiko and Caron, Bradley and Bullock, Daniel and Stemmler, Torsten and Fahle, Manfred and Pestilli, Franco and Freiwald, Winrich A.
"The human endogenous attentional control network includes a ventro-temporal cortical node"
Nature Communications
, v.12
, 2021
https://doi.org/10.1038/s41467-020-20583-5
Citation
Details
Sta. Cruz, Shaina and Dinov, Ivo D. and Herting, Megan M. and González-Zacarías, Clio and Kim, Hosung and Toga, Arthur W. and Sepehrband, Farshid
"Imputation Strategy for Reliable Regional MRI Morphological Measurements"
Neuroinformatics
, 2018
10.1007/s12021-019-09426-x
Citation
Details
Takemura, Hiromasa and Pestilli, Franco and Weiner, Kevin S. and Keliris, Georgios A. and Landi, Sofia M. and Sliwa, Julia and Ye, Frank Q. and Barnett, Michael A. and Leopold, David A. and Freiwald, Winrich A. and Logothetis, Nikos K. and Wandell, Brian
"Occipital White Matter Tracts in Human and Macaque"
Cerebral Cortex
, v.27
, 2017
10.1093/cercor/bhx070
Citation
Details
Yoshimine, Shoyo and Ogawa, Shumpei and Horiguchi, Hiroshi and Terao, Masahiko and Miyazaki, Atsushi and Matsumoto, Kenji and Tsuneoka, Hiroshi and Nakano, Tadashi and Masuda, Yoichiro and Pestilli, Franco
"Age-related macular degeneration affects the optic radiation white matter projecting to locations of retinal damage"
Brain Structure and Function
, 2018
10.1007/s00429-018-1702-5
Citation
Details
(Showing: 1 - 10 of 32)
(Showing: 1 - 32 of 32)
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