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Award Abstract # 1607145
Design and Evolution of Inorganic Reactivity in Supramolecular Protein Scaffolds

NSF Org: CHE
Division Of Chemistry
Recipient: UNIVERSITY OF CALIFORNIA, SAN DIEGO
Initial Amendment Date: August 23, 2016
Latest Amendment Date: August 4, 2017
Award Number: 1607145
Award Instrument: Continuing Grant
Program Manager: Max Funk
CHE
 Division Of Chemistry
MPS
 Directorate for Mathematical and Physical Sciences
Start Date: September 1, 2016
End Date: August 31, 2021 (Estimated)
Total Intended Award Amount: $640,000.00
Total Awarded Amount to Date: $640,000.00
Funds Obligated to Date: FY 2016 = $320,000.00
FY 2017 = $320,000.00
History of Investigator:
  • Faik Tezcan (Principal Investigator)
    tezcan@ucsd.edu
Recipient Sponsored Research Office: University of California-San Diego
9500 GILMAN DR
LA JOLLA
CA  US  92093-0021
(858)534-4896
Sponsor Congressional District: 50
Primary Place of Performance: University of California-San Diego
9500 Gilman Drive
La Jolla
CA  US  92093-0934
Primary Place of Performance
Congressional District:
50
Unique Entity Identifier (UEI): UYTTZT6G9DT1
Parent UEI:
NSF Program(s): Chemistry of Life Processes
Primary Program Source: 01001617DB NSF RESEARCH & RELATED ACTIVIT
01001718DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 9251
Program Element Code(s): 688300
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.049

ABSTRACT

With this award, the Chemistry of Life Processes Program of the Chemistry Division is supporting Dr. F. Akif Tezcan and his research group to design, engineer and evolve supramolecular protein assemblies with metal-based catalytic sites, for hydrolytic and redox transformations. Proteins are nature's premier building blocks for constructing complex biological machines that carry out normally challenging biochemical reactions. Examples are the light-driven water oxidation in photosystem II and nitrogen fixation in nitrogenases. The ability of chemists to control the assembly of proteins or to use them as synthetic building blocks has been limited. This research capitalizes on a protein design strategy developed previously in the Tezcan Lab (Metal-Templated Protein Interface Redesign). The project is designing and synthesizing protein assemblies, containing zinc and copper, with significantly improved enzymatic function. This project provides an expansive training ground for postdoctoral, graduate, undergraduate, and high school researchers in inorganic coordination chemistry, molecular biology, protein biochemistry, biophysical methods and computational protein design. The PI is undertaking outreach efforts on several different fronts, including active recruitment of members of underrepresented groups for research, recruitment of high school students through various self-initiated and campus-supported programs and involvement in science fairs at local elementary schools.

The project is an integration of inorganic chemistry principles, protein engineering and molecular biology to study and control protein self-assembly and inorganic reactivity. Protein building blocks are properly designed to assemble into prescribed supramolecular assemblies with interfacial metal centers. Physical, biochemical and catalytic properties of these assemblies are characterized by a large suite of techniques including protein crystallography, solution biophysical methods, enzyme activity assays, and various methods in inorganic spectroscopy. The enzymatic activities of these assemblies are fine-tuned and optimized by rational re-design as well as directed evolution. The proposed studies establish the viability and scope of proteins as building blocks for synthetic chemistry, and help elucidate how nature may have evolved proteins to utilize and harness metal reactivity.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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A. Kakkis, D. M. Gagnon, J. Esselborn, R. D. Britt, F. A. Tezcan "Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites" Angewandte Chemie International Edition , 2020 10.1002/anie.202009226
Jonathan Rittle, Mackenzie Field, Michael T. Green, F. Akif Tezcan "An Efficient, Step-Economical Strategy for the Design of Functional Metalloproteins" Nature Chemistry , v.11 , 2019 , p.434 10.1038/s41557-019-0218-9
J. Zhu, N. Avakyan, A. Kakkis, A. M. Hoffnagle, K. Han, Y. Li, Z. Zhang, T. Choi, Y. Na, C-J. Yu, F. A. Tezcan "Protein Assembly by Design" Chemical Reviews , 2021 10.1021/acs.chemrev.1c00308
L. A. Churchfield, A. George, F. A. Tezcan "Repurposing Proteins for New Bioinorganic Functions" Essays in Biochemistry , v.61 , 2017 10.1042/EBC20160068
L. A. Churchfield, A. Medina-Morales, J. D. Brodin, A. Perez, F. A. Tezcan "De Novo Design of an Allosteric Metalloprotein Assembly with Strained Disulfide Bonds" Journal of the American Chemical Society , v.138 , 2016 10.1021/jacs.6b08458
Lewis A. Churchfield, F. Akif Tezcan "Design and Construction of Functional Supramolecular Protein Assemblies" Accounts of Chemical Research , v.52 , 2019 , p.345 10.1021/acs.accounts.8b00617
Lewis A. ChurchfieldRobert G. AlbersteinLaura M. WilliamsonF. Akif Tezcan "Determining the structural and energetic basis of allostery in a de novo designed metalloprotein assembly" Journal of the American Chemical Society , v.140 , 2018 10.1021/jacs.8b05812
Woon Ju SongJaeseung YuF. Akif Tezcan "Importance of Scaffold Flexibility/Rigidity in the Design and Directed Evolution of Artificial Metallo-?-lactamases" Journal of the American Chemical Society , v.139 , 2017 , p.16772 10.1021/jacs.7b08981

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

Intellectual Merit: 

From selective binding of metal ions for controlling gene transcription to the reduction of O2 for driving aerobic respiration, metalloproteins carry out many cellular functions that are central to biology. The understanding of how metalloproteins function has grown immensely thanks to advances in structure determination methods, spectroscopy, bioanalytical chemistry and computation, as well as through studies of biomimetic inorganic complexes. Yet, the ability to replicate or improve upon the structures and functions of metalloproteins by de novodesign has remained at an elementary level. Similarly, there is little insight on how complex bioinorganic functions may have emerged on simple peptide/protein scaffolds during natural evolution. Toward addressing the gaps in the understanding of the interplay between protein structure/dynamics and metal coordination/reactivity, Prof. Akif Tezcan and his group have pursued a bottom-up design strategy in which active metal sites are built in nascent interfaces between protein building blocks. Toward this goal, the group has developed new chemical design strategies based on the use of metal coordination and disulfide bonding interactions for the assembly of supramolecular protein architectures and their utilization as platforms for engineering new metal-based functions, with some of the highlights including:

- the de novo design of allosteric protein assemblies in which the binding and dissociation of Zn2+ ions are remotely coupled to the formation and breakage of a disulfide bond over large distances;

-the design and construction of artificial metalloenzymes capable of ester and beta-lactam hydrolysis in vivo (and in vitro), whose examination led to new insights into the importance of protein flexibility/rigidity in the design and evolution of catalytic functions:

- the development of a new metalloprotein design approach (Metal Active Sites through Covalent Tethering, MASCoT), which enables the straightforward construction of metal-based active sites in disulfide-mediated protein-protein interfaces.

 

Broader Impacts:

This research project entailed a highly multidisciplinary approach that combined the principles of synthetic inorganic chemistry, rational protein design and in vivo evolution in unique ways to engineer and evolve new metal-based functionalities in biological platforms. Such an ability to construct complex biological structures with tunable metal sites–and integrating it with the evolvability of a living system–has not only provided fundamental insights into biological self-assembly processes, metal-protein interactions and bioinorganic reactivity, but also lent access to novel functionalities and reactivities, with potential impact on diverse research areas as inorganic chemistry, protein evolution and engineering, biological self-assembly, and biomaterials. In line with its multidisciplinary nature, the proposed project has enabled the research efforts a diverse group of postdocs, graduate, and undergraduate students and provided them with valuable experimental skills in coordination chemistry, molecular biology, in-lab evolution, protein biochemistry, chemical synthesis, spectroscopic techniques and crystallography. In addition, the grant has supported extensive outreach efforts including active recruitment of members of underrepresented groups for research, recruitment of high school students through various self-initiated and campus-supported programs, and participation in local science fairs.

 


Last Modified: 12/03/2021
Modified by: Faik A Tezcan

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