Award Abstract # 1556466
Collaborative Research: Molecular Basis Of Novel Phenotypes Resulting From Interpopulation Hybridization

NSF Org: DEB
Division Of Environmental Biology
Recipient: UNIVERSITY OF CALIFORNIA SAN DIEGO
Initial Amendment Date: March 4, 2016
Latest Amendment Date: March 4, 2016
Award Number: 1556466
Award Instrument: Standard Grant
Program Manager: Samuel Scheiner
DEB
 Division Of Environmental Biology
BIO
 Directorate for Biological Sciences
Start Date: March 1, 2016
End Date: February 29, 2020 (Estimated)
Total Intended Award Amount: $600,628.00
Total Awarded Amount to Date: $600,628.00
Funds Obligated to Date: FY 2016 = $600,628.00
History of Investigator:
  • Ronald Burton (Principal Investigator)
    rburton@ucsd.edu
Recipient Sponsored Research Office: University of California-San Diego Scripps Inst of Oceanography
8622 DISCOVERY WAY # 116
LA JOLLA
CA  US  92093-1500
(858)534-1293
Sponsor Congressional District: 50
Primary Place of Performance: UCSD; Scripps Inst. of Oceanography
9500 Gilman Dr., MC 0210
La Jolla
CA  US  92093-0202
Primary Place of Performance
Congressional District:
50
Unique Entity Identifier (UEI): QJ8HMDK7MRM3
Parent UEI: QJ8HMDK7MRM3
NSF Program(s): EVOLUTIONARY GENETICS
Primary Program Source: 01001617DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s):
Program Element Code(s): 737800
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

Climate change affects the geographic distribution of populations and species and can result in increased opportunities for hybridization between previously isolated populations. Hybridization can have a range of outcomes. Most frequently, hybridization results in loss of fitness (hybrid breakdown), effectively reducing interbreeding and promoting the formation of new species. Occasionally, however, novel combinations of genes yield ecological advantages to hybrids, including adaptation to new ecological niches. What attributes of parental populations predict the outcome of hybridization? Answering this question is the focus of this project, and will provide new insights into the effects of climate and ecological changes on adaptation rates and species formation. The researchers also will engage in novel public informal education at the Birch Aquarium and in hands-on experiences in marine biology for 5th grade students in underserved San Diego neighborhoods.

Predicting hybridization outcomes requires an understanding of the molecular basis of hybrid phenotypes. This project will conduct genomic analyses of hybrids produced by crosses between divergent populations of the copepod Tigriopus californicus. Previous work has shown that energy production by mitochondria is frequently disrupted in hybrids. Whole genome sequencing will be used to determine genetic differences between groups of hybrid copepods with normal versus disrupted mitochondrial performance; differentiation between the groups will identify candidate genes that are potentially responsible for hybrid breakdown. Results will address: a) Does hybridization result in widespread incompatibilities across the genome, or can targeted genes be identified? b) Are the same genomic regions responsible for hybrid breakdown in different interpopulation crosses? A similar approach will be used to examine the genomic basis of improved hybrid thermal tolerance. What genetic interactions allow some hybrids to survive temperatures that are lethal to both parental populations? Is hybrid performance predictable from genetic or ecological differences between parental populations?

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

Note:  When clicking on a Digital Object Identifier (DOI) number, you will be taken to an external site maintained by the publisher. Some full text articles may not yet be available without a charge during the embargo (administrative interval).

Some links on this page may take you to non-federal websites. Their policies may differ from this site.

(Showing: 1 - 10 of 16)
Barreto FS, Watson ET, Lima TG, Willett CS, Edmands S, Li W, Burton, RS "Genomic signatures of mitonuclear coevolution across populations of Tigriopus californicus" Nature Ecology & Evolution , v.2 , 2018 , p.1250 https://doi.org/10.1038/s41559-018-0588-1
Geoffrey E. HillJustin C. HavirdDaniel B. SloanRonald S. BurtonChris GreeningDamian K. Dowling "Assessing the fitness consequences of mitonuclear interactions in natural populations" Biological Reviews , v.94 , 2019 , p.1089 10.1111/brv.12493
Harada, AE and Burton RS "Consequences of HSF knockdown on gene expression during the heat shock response in Tigriopus californicus." J Exper. Biology , v.223 , 2020 , p.jeb208611 10.1242/jeb.208611
Harada AE and RS Burton "Ecologically relevant temperature ramping rates enhance the protective heat shock response: a comparison of abrupt and gradual thermal exposures in an intertidal marine ectotherm" Physiological and Biochemical Zoology , v.92 , 2019 , p.152 DOI: 10.1086/702339
Harada AE, Healy TM and Burton RS "Variation in thermal tolerance and its relationship to mitochondrial function across populations of Tigriopus californicus" Frontiers in Physiology , v.10 , 2019 , p.213 10.3389/fphys.2019.00213
Healy, Timothy M. and Burton, Ronald S. "Loss of mitochondrial performance at high temperatures is correlated with upper thermal tolerance among populations of an intertidal copepod" Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology , v.266 , 2023 https://doi.org/10.1016/j.cbpb.2023.110836 Citation Details
Healy, Timothy M. and Burton, Ronald S. "Strong selective effects of mitochondrial DNA on the nuclear genome" Proceedings of the National Academy of Sciences , v.117 , 2020 10.1073/pnas.1910141117 Citation Details
Healy, Timothy_M and Burton, Ronald_S and Montooth, ed., Kristi and Connallon, ed., Tim "Genetic incompatibilities in reciprocal hybrids between populations of Tigriopus californicus with low to moderate mitochondrial sequence divergence" Evolution , v.77 , 2023 https://doi.org/10.1093/evolut/qpad122 Citation Details
Healy, Timothy M. and Hargadon, Alexis Cody and Burton, Ronald S. "Developmental rate displays effects of inheritance but not of sex in interpopulation hybrids of <i>Tigriopus californicus</i>" Journal of Experimental Zoology Part A: Ecological and Integrative Physiology , 2023 https://doi.org/10.1002/jez.2709 Citation Details
Healy TM and Burton RS "Strong selective effects of mitochondrial DNA on the nuclear genome" PNAS , v.117 , 2020 , p.6616 10.1073/pnas.1910141117
Healy TM, Bock, AK and Burton RS "Variation in developmental temperature alters adulthood plasticity of thermal tolerance in Tigriopus californicus" J. Exper. Biology , v.222 , 2019 , p.jeb213405 10.1242/jeb.213405
(Showing: 1 - 10 of 16)

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

When a population becomes geographically isolated from the rest of its species, it may genetically diverge and ultimately become a new, reproductively isolated species.  In an early stage of this speciation process, hybrids between populations often show highly variable fitness, with some individuals showing fertility, survivorship and stress tolerances similar to the original parents, while others show higher or (more commonly) lower fitness.  Here our goal was to obtain a better understanding of hybrid fitness by examining both physiological traits of hybrids and their genetic composition (since each hybrid possesses a unique mix of the parental nuclear genomes and its mother's mitochondrial genome).  Studies focused on the copepod Tigriopus californicus which lives in pools on isolated rocky outcrops along the Pacific coast of North America.  Previous work on this species has found that fitness is frequently related to the performance of mitochondria, the intracellular organelles that synthesize most of the cell's energy in the form of ATP.  In this project, different T. californicus populations were hybridized in the lab and the resulting offspring were scored for various measures of fitness and then genotyped to assess the types of genomic interactions responsible for variable hybrid fitness.  The primary findings of these experiments were: 1) that hybrids with high fitness (measured by rate of development or survivorship) showed higher rates of ATP synthesis in isolated mitochondria, and 2) the genotypes of the high fitness hybrids showed a bias toward elevated frequencies of alleles at nuclear genes that were derived from the same population as the mitochondrial genome; when the mitochondria came from population 1, nuclear alleles from population 1 were favored over substantial portions of the genome (several chromosomes). These results strongly support the hypothesis that mitochondrial function is a consequence of the match between nuclear and mitochondrial genomes as is predicted by the intimate interactions between specific genes that form the ATP synthesizing machinery in the mitochondria.  Because essentially all eukaryotic cells share this mosaic nature of energy production (i.e., encoded in both nuclear and mitochondrial genomes), the demonstration that optimal function requires a matched set of genes has important implications across biology, ranging from conservation and evolutionary biology to human mitochondrial medicine.

In addition to its broader impacts for biology, the project has also contributed in the area of public scientific literacy.  Specific outreach projects have included 3 years of partnership with the Ocean Discovery Institute in providing a hands-on DNA barcoding exercise for 5th grade students (approximately 800 students annually) in underserved San Diego public schools, creation of a new exhibit at the Birch Aquarium at Scripps (which has over 400,000 visitors annually) describing how work on copepods informs general principles of response to ocean warming, and a public lecture on the biology of ocean warming to an audience of ~200 people at the Birch Aquarium; the latter is now available on YouTube where it has received over 19,000 views.

 


Last Modified: 07/06/2020
Modified by: Ronald S Burton

Please report errors in award information by writing to: awardsearch@nsf.gov.

Print this page

Back to Top of page