
NSF Org: |
OCE Division Of Ocean Sciences |
Recipient: |
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Initial Amendment Date: | August 5, 2015 |
Latest Amendment Date: | August 5, 2015 |
Award Number: | 1537959 |
Award Instrument: | Standard Grant |
Program Manager: |
Daniel J. Thornhill
OCE Division Of Ocean Sciences GEO Directorate for Geosciences |
Start Date: | October 1, 2015 |
End Date: | September 30, 2020 (Estimated) |
Total Intended Award Amount: | $699,677.00 |
Total Awarded Amount to Date: | $699,677.00 |
Funds Obligated to Date: |
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History of Investigator: |
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Recipient Sponsored Research Office: |
201 OLD MAIN UNIVERSITY PARK PA US 16802-1503 (814)865-1372 |
Sponsor Congressional District: |
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Primary Place of Performance: |
UNIVERSITY PARK PA US 16802-7000 |
Primary Place of
Performance Congressional District: |
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Unique Entity Identifier (UEI): |
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Parent UEI: |
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NSF Program(s): | BIOLOGICAL OCEANOGRAPHY |
Primary Program Source: |
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Program Reference Code(s): |
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Program Element Code(s): |
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Award Agency Code: | 4900 |
Fund Agency Code: | 4900 |
Assistance Listing Number(s): | 47.050 |
ABSTRACT
Reef-building acroporid corals form the foundation of shallow tropical coral communities throughout the Caribbean. Yet, the once dominant staghorn coral (Acropora cervicornis) and the elkhorn coral (A. palmata) have decreased by more than 90% since the 1980s, primarily from disease. Their continuing decline jeopardizes the ability of coral reefs to provide numerous societal and ecological benefits, including economic revenue from seafood harvesting and tourism and shoreline protection from extreme wave events caused by storms and hurricanes. Despite their protection under the U.S. Endangered Species Act since 2006, threats to the survival of reef-building acroporid corals remain pervasive and include disease and warming ocean temperatures that may lead to further large-scale mortality. However, hybridization among these closely related species is increasing and may provide an avenue for adaptation to a changing environment. While hybrids were rare in the past, they are now thriving in shallow habitats with extreme temperatures and irradiance and are expanding into the parental species habitats. Additional evidence suggests that the hybrid is more disease resistant than at least one of the parental species. Hybridization may therefore have the potential to rescue the threatened parental species from extinction through the transfer of adapted genes via hybrids mating with both parental species, but extensive gene flow may alter the evolutionary trajectory of the parental species and drive one or both to extinction. This collaborative project is to collect genetic and ecological data in order to understand the mechanisms underlying increasing hybrid abundance. The knowledge gained from this research will help facilitate more strategic management of coral populations under current and emerging threats to their survival. This project includes integrated research and educational opportunities for high school, undergraduate and graduate students, and a postdoctoral researcher. Students in the United States Virgin Islands will take part in coral spawning research and resource managers will receive training on acroporid reproduction to apply to coral restoration techniques.
Current models predict the demise of reefs in the next 200 years due to increasing sea surface temperatures and ocean acidification. It is thus essential to identify habitats, taxa and evolutionary mechanisms that will allow some coral species to maintain their role as foundation fauna. Hybridization can provide an avenue for adaptation to changing conditions. Corals hybridize with some frequency and results may range from the introduction of a few alleles into existing parent species via introgression, to the birth of a new, perhaps better adapted genetic lineage. The only widely accepted coral hybrid system consists of the once dominant but now threatened Caribbean species, Acropora cervicornis and A. palmata. In the past, hybrid colonies originating from natural crosses between elkhorn and staghorn corals were rare, and evidence of hybrid reproduction was limited to infrequent matings with the staghorn coral. Recent field observations suggest that the hybrid is increasing and its ecological role is changing throughout the Caribbean. These hybrids appear to be less affected by the disease that led to the mass mortality of their parental species in recent decades. Hybrids are also found thriving in shallow habitats with high temperatures and irradiance suggesting they may be less susceptible to future warming scenarios. At the same time, they are expanding into the deeper parental species habitats. Preliminary genetic data indicate that hybrids are now mating with each other, demonstrating the potential for the formation of a new species. Further, hybrids appear to be capable of mating with both staghorn and elkhorn coral, perhaps leading to gene flow between the parent species via the hybrid. Research is proposed to address how the increase in hybridization and perhaps subsequent introgression will affect the current ecological role and the future evolutionary trajectory of Caribbean acroporids. Specifically, this collaborative project aims to answer the following questions: 1) What is the historic rate, direction, and degree of introgression across species ranges and genomes? Linkage block analysis based on genome-wide SNP genotyping across three replicate hybrid zones will answer this question. 2) What is the current extent and future potential of later generation hybrid formation? Morphometric and genetic analyses combined with in vitro fertilization assays will be used. 3) What mechanisms allow hybrids to thrive in hot, shallow waters? A series of manipulative in situ and ex situ experiments will determine whether biotic or abiotic factors favor hybrid survival in shallow waters. 4) Are hybrids more disease resistant than the parentals species? Disease transmission assays in reciprocal transplant experiments and histological analysis to determine the extent of disease will be conducted. A multidisciplinary approach will be taken that combines traditional and cutting edge technology to provide a detailed analysis of the evolutionary ecology of Caribbean corals.
PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH
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PROJECT OUTCOMES REPORT
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This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.
Reef-building acroporid corals form the foundation of shallow tropical coral communities throughout the Caribbean. Yet, the once dominant staghorn coral (Acropora cervicornis) and the elkhorn coral (A. palmata) have decreased by more than 90% since the 1980s, primarily from disease. Their continuing decline jeopardizes the ability of coral reefs to provide numerous societal and ecological benefits, including economic revenue from seafood harvesting and tourism and shoreline protection from extreme wave events caused by storms and hurricanes. Despite their protection under the U.S. Endangered Species Act since 2006, threats to the survival of reef-building acroporid corals remain pervasive and include disease and warming ocean temperatures that may lead to further large-scale mortality. However, hybridization among these closely related species is increasing and may provide an avenue for adaptation to a changing environment. While hybrids were relatively rare in the past, they are now thriving in shallow habitats with extreme temperatures and solar irradiance and are expanding into the parental species habitats. Survey data on the prevalence of coral bleaching and disease in the three acroporids suggested that hybrids might be more resistant than one or both parental species to these stressors. Hybridization may therefore have the potential to rescue the threatened parental species from extinction through the transfer of adapted genes via hybrids mating with both parental species, but extensive gene flow may alter the evolutionary trajectory of the parental species and drive one or both to extinction. This collaborative project with the Fogarty lab (award number 1929979) aimed to conduct genetic and ecological data to understand the mechanisms underlying increasing hybrid abundance and the ecological and evolutionary role hybridization has in the Caribbean acroporid system.
To study the genetic consequences of hybridization in Caribbean acroporids, the genomes of the two parental species were sequenced. The A. palmata genome now rivals the best coral genomes out there with a chromosome-scale assembly. The species-specific loci identified from the genomic data revealed that the hybrid contains 'runs of homozygosity' that skew towards A. palmata. In other words, F1 hybrids defy the expectation of having one allele from each parent. Instead, they often have two alleles from just A. palmata. These stretches in the hybrid genomes can arise from multiple genetic mechanisms. Population genomic surveys of the acroporid taxa across the Caribbean showed that geneflow is bi-directional from the hybrid into both parents, contrary to previous findings. However, second generation hybrids were not detected, reducing the extinction threat to the parent species. To further investigate the mechanisms underlying hybrid vigor discovered by the Fogarty lab, de novo transcriptomes were sequenced for each species. Gene expression patterns of hybrid colonies were more similar to A. palmata under control conditions. However, under heat stress, hybrid expression levels remained largely unchanged, while expression of the parental species was more variable. This further supports thermal resilience of the hybrids and thus hybrids might be particularly useful in shallow-reef restoration projects. The extensive genomic resources generated led to additional discoveries. For example, the sequence reads allowed for the first population genomic study of a coral algal symbiont (Symbiodinium 'fitti') and a coral parasite (Aquarickettsia rohweri) in the Caribbean. Further, the genomic data were instrumental in designing the first commercially available genotyping chip for any coral. Applying the genotyping chip to the parent species led to the ground-breaking discovery that sexually produced A. palmata larvae can inherit somatic mutations acquired during the lifetime of the parent colony.
This NSF grant supported, trained, and/or provided research experience for 8 Phd students and 6 undergraduate students, mostly women and several students from underrepresented groups as well as three postdoctoral researchers. Baums incorporated products from this research into the lectures of undergraduate and graduate courses. Technology developed under this grant included the design of a coral genotyping chip that was transferred to a commercial provider. The chip broadens access to coral genetic data to users with limited laboratory and computational infrastructure. Outreach products included webinars and publications on genetic considerations for coral restoration, and articles published in the popular press. Baums chairs a working group tasked with formulating guidelines for incorporating genetic considerations into coral restoration projects and trained zoo and aquarium professionals in these methods. Results were disseminated to the scientific community via numerous conference presentations and fourteen peer reviewed publications. Three open access protocols were published to aid in the genotyping of corals. The knowledge gained from this research will help facilitate more strategic management of acroporid populations under current and emerging threats to their survival.
Last Modified: 02/16/2021
Modified by: Iliana Baums
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