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Award Abstract # 1536776
Patterns of Microbial Community Structure Within and Between Hadal Environments

NSF Org: OCE
Division Of Ocean Sciences
Recipient: UNIVERSITY OF CALIFORNIA SAN DIEGO
Initial Amendment Date: August 7, 2015
Latest Amendment Date: August 7, 2015
Award Number: 1536776
Award Instrument: Standard Grant
Program Manager: Michael Sieracki
OCE
 Division Of Ocean Sciences
GEO
 Directorate for Geosciences
Start Date: September 1, 2015
End Date: August 31, 2019 (Estimated)
Total Intended Award Amount: $141,134.00
Total Awarded Amount to Date: $141,134.00
Funds Obligated to Date: FY 2015 = $141,134.00
History of Investigator:
  • Douglas Bartlett (Principal Investigator)
    dbartlett@ucsd.edu
Recipient Sponsored Research Office: University of California-San Diego Scripps Inst of Oceanography
8622 DISCOVERY WAY # 116
LA JOLLA
CA  US  92093-1500
(858)534-1293
Sponsor Congressional District: 50
Primary Place of Performance: UCSD; Scripps Inst. of Oceanography
9500 Gilman Dr., MC 0210
La Jolla
CA  US  92093-0210
Primary Place of Performance
Congressional District:
50
Unique Entity Identifier (UEI): QJ8HMDK7MRM3
Parent UEI: QJ8HMDK7MRM3
NSF Program(s): BIOLOGICAL OCEANOGRAPHY
Primary Program Source: 01001516DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 8811, 9117
Program Element Code(s): 165000
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.050

ABSTRACT

The deepest portion of the ocean is present in ocean trenches, whose steep walls descend from approximately 4 miles down to depths that in some cases are close to 7 miles below the seawater surface. At these locations Earth's crust is recycled. Perhaps not surprisingly given their remoteness, deep ocean trenches are the least understood habitats in the ocean. The researchers participating in this project are working to characterize the microbes present in two of the deepest trenches present on Earth, both in the Pacific Ocean, the Kermadec Trench located north of New Zealand, and the Mariana Trench, located east and south of the island of Guam. Most of the Mariana Trench is located within the United States Mariana Trench Marine National Monument. Relatively little is known about the diversity and adaptations of the microorganisms in deep ocean trenches. An unknown fraction of the microbes present have descended from shallow waters above and are unlikely to participate in any nutrient cycles in the deep sea. Others are adapted to near freezing temperatures and up to pressures greater than 10e7 kilograms per square meter (16,000 pounds per square inch). These latter microbes perform important roles recycling organic matter. But who are they? This project is contributing to the training of diverse undergraduate and graduate students participating in research, additional undergraduate students learning about microbes inhabiting extreme environments in a web-based class, and additional graduate students and postdoctoral scientists participating in an advanced training course being offered in Antarctica.

Experiments being performed include direct counts of prokaryotes and viruses in seawater and sediments, analyses of the abundance and phylogenetic breadth of culturable heterotrophic bacteria at a range of pressures, measurements of bacterial community species diversity and richness both within and across seawater and sediment samples, as well as within and across the two trench systems, measurements of microbial activity as a function of pressure and the identification of high pressure-active cells. The data generated from these analyses are being integrated into the results of additional chemical, geological and biological measurements performed by others as a part of the National Science Foundation funded Hadal Ecosystems Studies Project. Two of the working hypotheses are that prokaryote numbers and diversity are generally positively correlated with surface productivity and proximity to the trench axis and that bacterial taxa exist which are endemic to specific trenches, present in multiple trenches and more widely distributed in deep-sea environments.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 16)
Jonathan Tarn Logan M. Peoples Kevin Hardy James Cameron Douglas H. Bartlett "Identification of Free-Living and Particle-Associated Microbial Communities Present in Hadal Regions of the Mariana Trench" Frontiers in Microbiology , v.7 , 2016 , p.665 10.3389/fmicb.2016.00665
Jonathan TarnLogan M. PeoplesKevin HardyJames CameronDouglas H. Bartlett "Identification of Free-Living and Particle-Associated Microbial Communities Present in Hadal Regions of the Mariana Trench." Frontiers in Microbiology , v.7 , 2016 , p.665 10.3389/fmicb.2016.00665
Kusube, M., Kyaw, T. S., Tanikawa, K., Chastain, R. A., Hardy, K., Cameron, J. and Bartlett, D. H. "Colwellia marinimaniae sp. nov., a hyperpiezophilic species isolated from an amphipod within the Challenger Deep, Mariana Trench." International Journal of Systematic and Evolutionary Microbiology. , v.67 , 2017 , p.824 10.1099/ijsem.0.001671
Kusube, M., Kyaw, T. S., Tanikawa, K., Chastain, R. A., Hardy, K., Cameron, J. and Bartlett, D. H. "Colwellia marinimaniae sp. nov., a hyperpiezophilic species isolated from an amphipod within the Challenger Deep, Mariana Trench." International Journal of Systematic and Evolutionary Microbiology , v.67 , 2017 , p.824 10.1099/ijsem.0.001671
Lan, Y. Sun, J. Tain, R. Bartlett, D. H. Li, R. Wong, Y.-H. Zhang, W. Qiu, J.-W. Xu, T. He, L.-S. Tabata, H. G. Qian, P.-Y. "Molecular adaptation in the world's deepest-living animal: Insights from transcriptome sequencing of the hadal amphipod." Molecular Ecology , v.26 , 2017 , p.3732 10.1111/mec.14149
Lan, Y.Sun, J.Tain, R.Bartlett, D. H.Li, R.Wong, Y.-H.Zhang, W.Qiu, J.-W.Xu, T.He, L.-S.Tabata, H. G.Qian, P.-Y. "Molecular adaptation in the world's deepest-living animal: Insights from transcriptome sequencing of the hadal amphipod." Molecular ecology , v.26 , 2017 , p.3732 10.1111/mec.14149
Logan M. Peoples1, Sierra Donaldson1, Oladayo Osuntokun1, Qing Xia1,2, Alex Nelson3, Jessica Blanton1, Eric E. Allen1, Matthew J. Church3,4, Douglas H. Bartlett1* "Vertically distinct microbial communities in the Mariana and Kermadec trenches" PLoS ONE , v.13 , 2018 , p.e0195102 10.1371/journal.pone.0195102
Logan M. Peoples, Eleanna Grammatopoulou, Michelle Pombrol, Xiaoxiong Xu, Oladayo Osuntokun, Jessica Blanton, Eric E. Allen, Clifton C. Nunnally, Jeffrey C. Drazen, Daniel J. Mayor and Douglas H. Bartlett "Microbial Community Diversity Within Sediments From Two Geographically Separated Hadal Trenches" Frontiers in Microbiology , v.10 , 2019 , p.347 10.3389/fmicb.2019.00347
Logan M. Peoples, Sierra Donaldson, Oladayo Osuntokun, Qing Xia, Alex Nelson, Jessica Blanton, Eric E. Allen, Matthew J. Church, Douglas H. Bartlett "Vertically distinct microbial communities in the Mariana and Kermadec trenches" PLoS ONE , v.13 , 2018 , p.e0195102 10.1371/journal.pone.0195102
Peoples, L. M., Norenberg, M., Price, D., McGoldrick, M., Novotny, M., Bochdansky, A., Bartlett,D. H. "A full-ocean-depth rated modular lander and pressure-retaining sampler capable ofcollecting hadal-endemic microbes under in situ conditions" Deep Sea Research Part I , v.143 , 2019 , p.50 10.1016/j.dsr.2018.11.010
Rosa León-Zayas Logan Peoples Jennifer F. Biddle Sheila Podell Mark Novotny James Cameron Roger S. Lasken Douglas H. Bartlett "The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the Candidate Superphylum Parcubacteria (OD1)" Environmental Microbiology , v.19 , 2017 , p.2769 10.1111/1462-2920.13789
(Showing: 1 - 10 of 16)

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

Intellectual Merit: This project compared the types of microbes present in bottom water and surficial sediments of two of the deepest locations on Earth.  These were the Kermadec Trench located off the north coast of New Zealand, and the Mariana Trench, mostly located within the United States Mariana Trench Marine National Monument, but also occupying a portion of the territorial waters of Micronesia.   Trenches can be considered to be upside down mountain ranges.  These two trench systems are separately from one another by ~6,000 kilometers. In this grant we compared the microbes in these two trenches using highly quantitative marker gene DNA sequencing and comparative genomics.  In addition, the microbes were also examined in terms of their activity and growth characteristics.  The results indicated that deep-sea microbial populations consist of a mixture of taxa descending from shallow waters above and taxa adapted to life at great depth, including extremes of high pressure and low temperature.  Seawater depth, trench of collection, size fraction, sediment depth, and organic levels were all found to correlate with distinctive types of microorganisms (Figure 2).  Long-term incubation of trench sediments at the pressures and temperatures of their natural environment dramatically changed the composition of the microbial community to one containing a majority of previously documented and cultured high pressure-adapted microbes.  Seventy-nine draft genome sequences from trench microbes were obtained.  Analyses of these genomes indicated that many of the same species are shared between these two widely separated trenches, but that trench-specific strains also exist.  This work demonstrated that microbes in deep trenches can be shared across great geographic distances, presumably moving along ocean currents. 

Broader Impacts: A detailed description was provided of a free-falling and ascending instrument coupled with a pressure-retaining seawater sampling system. This instrument is of value to the deep-sea science community.  The grant provided support for one PhD student, the training of 7 undergraduates (4 serving as coauthors on publications, two in PhD programs, one in a MD-PhD program), and provided the opportunity to host 5 visiting PhD students (Oregon State University, Princeton University, IIT, India, University of Aberdeen, and Southern University of Denmark). It was associated with numerous BCO-DMO datasets and 16 international presentations. Outreach included presentations to >60 middle/high school girls, a microbial ecology booth at the Birch Aquarium, a lecture to 160 K-12 teachers, audio/written interviews for "Science News for Students", numerous undergraduate and graduate lectures by the PI and PhD student, and service as instructor (PI) and TA (PhD student) in the NSF Polar Biology Training Course in Antarctica.


Last Modified: 12/16/2019
Modified by: Douglas H Bartlett

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