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Award Abstract # 1458021
Collaborative Research: ABI Development: The PEcAn Project: A Community Platform for Ecological Forecasting

NSF Org: DBI
Division of Biological Infrastructure
Recipient: TRUSTEES OF BOSTON UNIVERSITY
Initial Amendment Date: July 8, 2015
Latest Amendment Date: February 22, 2021
Award Number: 1458021
Award Instrument: Standard Grant
Program Manager: Peter McCartney
DBI
 Division of Biological Infrastructure
BIO
 Directorate for Biological Sciences
Start Date: July 15, 2015
End Date: September 30, 2021 (Estimated)
Total Intended Award Amount: $487,862.00
Total Awarded Amount to Date: $487,862.00
Funds Obligated to Date: FY 2015 = $487,862.00
History of Investigator:
  • Michael Dietze (Principal Investigator)
    dietze@bu.edu
Recipient Sponsored Research Office: Trustees of Boston University
1 SILBER WAY
BOSTON
MA  US  02215-1703
(617)353-4365
Sponsor Congressional District: 07
Primary Place of Performance: Trustees of Boston University
685 Commonwealth Ave
Boston
MA  US  02215-1406
Primary Place of Performance
Congressional District:
07
Unique Entity Identifier (UEI): THL6A6JLE1S7
Parent UEI:
NSF Program(s): ADVANCES IN BIO INFORMATICS,
CI REUSE
Primary Program Source: 01001516DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 7433
Program Element Code(s): 116500, 689200
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

Computer simulations play an essential role in ecological research, the management of national forests and other public and private land resources, and projections of climate change impacts on ecosystem services at the local, state, national, and international level. However, at the moment, there are a number of barriers slowing the pace of model improvement and reducing their wider use. First, the software for using each model is unique and does not communicate well with other models. Second, because each model is unique, the tools to manage data going into models, analyze models, and visualize results are not shared. In this project PEcAn (Predictive Ecosystem Analyzer) is being developed to provide a common set of software tools for researchers and land managers to effectively work with multiple ecosystem models and data. Web technologies will be used to allow distant modeling teams to share information, work together, and better use public and private cloud and supercomputing resources. Other tools will be developed to identify model errors and combine new and existing applications into workflows to make ecological research more efficient, better forecast ecosystem services, and support evidence-based decision making. The PEcAn team will also develop training tools for new users and work with the scientific community to add more models to PEcAn. PEcAn will make ecological research more transparent, repeatable, and accountable.

PEcAn is an open-source ecoinformatics system designed for ecologists with a range of modeling backgrounds to be able to better and more easily parameterize, run, analyze, and assimilate data into ecosystem models at local and regional scales. This project will expand the PEcAn user community, incorporate more models, and develop tools that are more intuitive and accessible. Further, the project intends to transform tools for managing the flows of information into and out of ecosystem models into a resilient, scalable, and distributed peer-to-peer network for managing the flow of this information among modeling teams and with the broader community. To support a larger number of models, data processing workflows will be improved and tools will be developed for multi-model visualization and benchmarking. Applications that distribute analyses across the PEcAn network, cloud, and high-performance computing environments will be used to better understand model structural error using data mining approaches. Models will benchmarked over a range of environmental conditions, allowing model improvement to be tracked and users to select the best models for different applications in an informed manner. Finally, PEcAn tools will be combined into customizable workflows for real-time synthesis, forecasting, and decision support. By allowing modelers to focus on science rather than informatics, and allowing ecologists to easily compare their data to models, PEcAn will greatly accelerate the pace of model improvement and hypothesis testing. These activities are essential for improving ecosystem models and reducing uncertainty of the impacts of climate change on ecosystems and carbon cycle-climate feedbacks. Project information and results are available at http://pecanproject.org while project computer code is available at https://github.com/pecanproject.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 48)
Alexey N. Shiklomanov and Michael C. Dietze and Toni Viskari and Philip A. Townsend and Shawn P. Serbin "Quantifying the influences of spectral resolution on uncertainty in leaf trait estimates through a Bayesian approach to RTM inversion" Remote Sensing of Environment , v.183 , 2016 , p.226 - 238 http://dx.doi.org/10.1016/j.rse.2016.05.023
Ankur R. Desai "It?s So UnFAIR!" AGU EOS Editor's Vox , 2016 10.1007/s11104-016-3084-x
Ankur R. Desai and Ke Xu and Hanqin Tian and Peter Weishampel and Jonathan Thom and Dan Baumann and Arlyn E. Andrews and Bruce D. Cook and Jennifer Y. King and Randall Kolka "Landscape-level terrestrial methane flux observed from a very tall tower" Agricultural and Forest Meteorology , v.201 , 2015 , p.61--75 10.1016/j.agrformet.2014.10.017
Ankur R. Desai and Martin Lavoie and Dave Risk and Jianwu Tang and Katherine Todd-Brown and Rodrigo Vargas "The value of soil respiration measurements for interpreting and modeling terrestrial carbon cycling" Plant and Soil , v.413 , 2018 , p.1--25 10.1029/2018EO097389
Asbjornsen, H and Campbell, J and Jennings, K and Vadeboncoeur, M and McIntire, C and Templer, P and Phillips, R and Bauerle, T and Dietze, M and Frey, S and et al. "Guidelines and considerations for designing precipitation manipulation experiments in forest ecosystems." Methods in Ecology and Evolution , 2018
Baatz, R.; Hendricks-Franssen, H-J.; Euskirchen, E.; Debjani, S.; Dietze, M.; Ciavatta,S.; Fennel, K.; Beck, Hylke; de Lannoy, G.; Pauwels, V.; Montzka, C.; Williams, M.; Mishra, U.; Van Looy, K.L.; Bogena, H.; Adamescu, M.; Fox, A.; Görgen, K.; Naz, B.; "Reanalysis in Earth System Science: Towards Terrestrial Ecosystem Reanalysis" Reviews of Geophysics , v.59 , 2021 , p.e2020RG00 http://doi.org/10.1029/2020RG000715
Babst, F and Charney, N and Firend, A and Girandin, M and Klesse, S and Moore, D and Seftigen, K and Bjorklund, J and Bouriaud, O and Dawson, A and et al. "When tree rings go global: challenges and opportunities for retro- and prospective insight." Quaternary Science Reviews , 2018
Bond-Lamberty, B., Christianson, D.S., Malhotra, A., Pennington, S.C., Sihi, D., (97 co-authors) including Desai, A.R. "COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data," Global Change Biology , v.26 , 2020 , p.7268 10.1111/gcb.15353
Dietze, M and Averill, C and Foster, J and Wheeler, K "Ecological Forecasting" Oxford Bibliographies , 2018
Dietze, Michael C. and Fox, Andrew and Beck-Johnson, Lindsay M. and Betancourt, Julio L. and Hooten, Mevin B. and Jarnevich, Catherine S. and Keitt, Timothy H. and Kenney, Melissa A. and Laney, Christine M. and Larsen, Laurel G. and Loescher, Henry W. and "Iterative near-term ecological forecasting: Needs, opportunities, and challenges" Proceedings of the National Academy of Sciences , 2018 10.1073/pnas.1710231115
Euskirchen, E. S., S. P. Serbin, T. B. Carman, J. M. Fraterrigo, H. Genet, C. M. Iversen,V. Salmon, and A. D. McGuire "Assessing dynamic vegetation model parameter uncertainty across Alaskan arctic tundra plant communities" Ecological Applications , 2021 , p.e02499 10.1002/eap.2499
(Showing: 1 - 10 of 48)

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

Intellectual Merit: Society is dependent on ecosystems and ecosystem services for its survival, but mankind faces numerous environmental challenges in the 21st century, including climate change, invasive species, land use change, and pollution. Process-based ecosystem models play a critical role in understanding and forecasting environmental change. PEcAn is an open-source and open-science community CI project designed to make process-based ecosystem modeling more accessible, automated and repeatable. PEcAn facilitates data-model fusion, forecasting, and decision support through the development of novel tools and algorithms. Core advancements include the development of a new emulator-based Hierarchical Bayes model calibration toolbox, a new iterative data assimilation algorithm (the Tobit-Wishart Ensemble Filter), expanded analysis, visualization, and benchmarking modules, and new pipelines for ingesting field, tower, and remotely-sensed data streams and their associated uncertainties. This round of PEcAn funding also saw the expansion of  ensemble-based uncertainty propagation to include not just parameters but also drivers, initial conditions, hierarchical random effects (spatial parameter variability), and process error, enabling us to perform the most complete and comprehensive analyses to date of the uncertainties in terrestrial carbon cycle projections. These analyses call into question a number of common modeling assumptions (e.g. spin-up based initialization, demonstration that demographic stochasticity is insufficient to capture model process error).  Overall, PEcAn produced >50 published manuscripts and >150 conference presentations. 


Broader Impacts: PEcAn has been used in >25 training workshops or courses and was central to nine graduate dissertations (+ four in progress), and >20 undergraduate projects. The system has seen >3000 downloads, >175 GitHub forks, and >60 code contributors. It has been used in >16 other funded projects across a suite of US and international funding agencies, including serving as the base of two commercial carbon accounting systems. This project also supported the development of PI Dietze’s Ecological Forecasting textbook and courses (both semester and short-courses), which were instrumental in the launch of the Ecological Forecasting Initiative, an international interdisciplinary community of practice.


Last Modified: 01/11/2022
Modified by: Michael Dietze

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