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Award Abstract # 1428148
MRI: Development of an ENVIRATRON - an accelerator for climate change research

NSF Org: DBI
Division of Biological Infrastructure
Recipient: IOWA STATE UNIVERSITY OF SCIENCE AND TECHNOLOGY
Initial Amendment Date: August 25, 2014
Latest Amendment Date: July 24, 2019
Award Number: 1428148
Award Instrument: Standard Grant
Program Manager: Robert Fleischmann
DBI
 Division of Biological Infrastructure
BIO
 Directorate for Biological Sciences
Start Date: September 1, 2014
End Date: August 31, 2020 (Estimated)
Total Intended Award Amount: $929,773.00
Total Awarded Amount to Date: $929,773.00
Funds Obligated to Date: FY 2014 = $929,773.00
History of Investigator:
  • Steven Whitham (Principal Investigator)
    swhitham@iastate.edu
  • Stephen Howell (Co-Principal Investigator)
  • Carolyn Lawrence-Dill (Co-Principal Investigator)
  • Thomas Lubberstedt (Co-Principal Investigator)
  • Lie Tang (Co-Principal Investigator)
Recipient Sponsored Research Office: Iowa State University
1350 BEARDSHEAR HALL
AMES
IA  US  50011-2103
(515)294-5225
Sponsor Congressional District: 04
Primary Place of Performance: Iowa State University
IA  US  50011-2207
Primary Place of Performance
Congressional District:
Unique Entity Identifier (UEI): DQDBM7FGJPC5
Parent UEI: DQDBM7FGJPC5
NSF Program(s): Major Research Instrumentation
Primary Program Source: 01001415DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 9150
Program Element Code(s): 118900
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

An award is made to Iowa State University to develop and construct an Enviratron, a facility to test and evaluate the performance of plants under variable environmental conditions. To date most research on the performance of plants under different environmental conditions has been conducted with a limited number of differences, such as a single environmental stress versus control (unstressed) conditions. The Enviratron will permit researchers to incrementally alter multiple critical variables to better simulate changing conditions that will be faced in the future. The Enviratron will be an important research and training tool for students in the plant sciences, particularly for underrepresented minorities who will participate in the project through the George Washington Carver Summer Research Internship Program. It will provide them with the experience of simulating different environmental conditions or different climates of the world and the opportunity to study and improve the performance of plants under those conditions. It will also inspire engineering students to learn how to work hand in hand with plant scientists. The Enviratron will also be a demonstration centerpiece open to farmers and other visitors to promote appreciation and a better understanding of agricultural research.

Understanding how organisms in the biosphere can adapt to climate change is one of the grand scientific challenges of these times. This project creates a phenomics platform that will enable researchers to non-destructively monitor the performance of plants throughout their lifecycle under variable environmental conditions. The Enviratron represents a revolutionary new design in plant phenomics facilities. It consists of an array of plant growth chambers to create different environmental conditions. Unlike commercial plant phenomics systems, plants will not be conveyed out of the growth chambers to monitor their growth performance, rather a rover with a robotically controlled arm will periodically visit each chamber to image and analyze the plants. In addition to more standard visible light, fluorescence, near infrared and infrared imaging, sensors on the rover will be capable of imaging and conducting analyses not available on commercial systems such as hyperspectral and holographic imaging and Raman spectroscopy. The robot-assisted sensing approach will enable precise location-specific data acquisition, resulting in improved sampling strategies and data quality. The Enviratron will be used for research as well as graduate and undergraduate student training and will be located in a facility where it can be used to educate the public about climate change research.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Bao,Y., Zarecor, S., Shah, D., Tuel, T., Campbell, D.A., Chapman, A.V.E., Imberti, D., Kiekhaefer, D., Imberti, H., Lübberstedt, T., Yin, Y., Nettleton, D., Lawrence-Dill, C.J., Whitham, S.A., Tang, L., Howell, S.H. "Assessing plant performance in the Enviratron" Plant Methods , v.15 , 2019 , p.117 10.1186/s13007-019-0504-y
Li, Z., Tang, J., Srivastava, R., Bassham, D.C. and S.H. Howell "The Transcription Factor bZIP60 Links the Unfolded Protein Response (UPR) to the Heat Stress Response (HSR) in Maize" The Plant Cell , v.32 , 2020 , p.3559 10.1105/tpc.20.00260
Yin Bao, Dylan S. Shah, Lie Tang "3D Perception-Based Collision-Free Robotic Leaf Probing for Automated Indoor Plant Phenotyping" Transactions of the ASABE , v.61 , 2018 , p.859 10.13031/trans.12653

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

The Enviratron is an automated plant growth and imaging facility that is used to assess plant performance under a variety of environmental scenarios.  The Enviratron consists of eight custom-made plant growth chambers that can support the growth of crop and model plants under up to eight different environmental conditions in a single experiment. The environmental parameters that can be adjusted are: carbon dioxide concentration, day length, light intensity, light quality, temperature, humidity, and soil water content. The most unique aspect of the growth chambers is that a robotic rover can enter them on-demand without disrupting the plant growth conditions. The rover operates autonomously and carries an array of cameras and sensors that collect data according to user-specified schedules. The robotic imaging enables cameras and sensors to be deployed at the optimal angles and distances from the plant canopy, and it also enables the use of a fluorometric probe that measures chlorophyll fluorescence, which must be oriented to the target leaf surface at a specific distance and angle. The data are uploaded from the robot to a local server and then transferred to the NSF CYVERSE Data Store for long-term storage and community access once released to the public. An experimental scheduler was developed that captures key information about the phenotyping experiments so that they can be repeated and the data are useful to other scientists over the long-term. The scheduler provides an interface between the user and the Enviratron system so that the Enviratron is programmed with the environmental settings of each growth chamber, the numbers and locations of plants in each chamber, and activities of the robot.

The interdisciplinary team met together monthly during the first four years of this project to plan, problem-solve, and evaluate progress.  One group of engineers designed and constructed the plant growth chambers, while another group of engineers developed the robotic rover.  One group of bioinformaticists and data analysts developed the software and the data collection pipeline, while another group developed the image analysis.  A group of facilities personnel designed and built the building and developed the utilities to serve the Enviratron.  A group of statisticians developed experimental designs for conducting experiments and another group of plant scientists evaluated the plant physiological parameters for different species of plants grown in the facility.  These scientists and engineers devoted part of their careers to this project and would not have had the chance to work together under other circumstances.  We have a team of people who are willing, able, and interested to work together across disciplines in the future.  For the young scientists - the undergraduates and graduate students in particular - this was an extraordinary learning experience that they would not have had if they had been working on their own or in their own independent lab groups.

Another important outcome was the close and productive interaction between the Iowa State researchers and the engineering team at Percival Scientific, which was an important learning experience for both the academic and industrial scientists and engineers.  The partnership went far beyond the usual contractual relationship of acquiring goods or materials from a company.  The engineers at Percival helped to develop the concept, design the components, and met with the team to come up with solutions to challenges in building this unique facility.

Finally, the Enviratron is performing as envisioned by supporting cutting-edge science related to environmental effects on the growth, development, and physiology of crop plants. We have demonstrated that physiological processes that occur in nature also occur in the controlled growth conditions.  One example is the research recently published in The Plant Cell concerning the effects of diurnal temperature cycles on the induction of stress in maize.  The research could not have been done without the Enviratron, because it required the use of all eight chambers in the Enviratron to simulate different daily temperature cycles and robotics to monitor the performances of plants under those conditions.  The Enviratron is one of the few facilities in the world that can grow crop plants, such as maize and soybean, under controlled conditions in many different environmental regimes that simulate past, current, and future climate scenarios. 


Last Modified: 11/27/2020
Modified by: Steven A Whitham

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