Award Abstract # 1413328
Tuning Redox Potentials of Metal Centers in a Single Protein

NSF Org: CHE
Division Of Chemistry
Recipient: UNIVERSITY OF ILLINOIS
Initial Amendment Date: June 29, 2014
Latest Amendment Date: June 29, 2014
Award Number: 1413328
Award Instrument: Standard Grant
Program Manager: Pui Ho
puiho@nsf.gov
 (703)292-0000
CHE
 Division Of Chemistry
MPS
 Directorate for Mathematical and Physical Sciences
Start Date: July 1, 2014
End Date: June 30, 2017 (Estimated)
Total Intended Award Amount: $500,000.00
Total Awarded Amount to Date: $500,000.00
Funds Obligated to Date: FY 2014 = $500,000.00
History of Investigator:
  • Yi Lu (Principal Investigator)
    yi.lu@utexas.edu
Recipient Sponsored Research Office: University of Illinois at Urbana-Champaign
506 S WRIGHT ST
URBANA
IL  US  61801-3620
(217)333-2187
Sponsor Congressional District: 13
Primary Place of Performance: University of Illinois at Urbana-Champaign
IL  US  61820-7473
Primary Place of Performance
Congressional District:
13
Unique Entity Identifier (UEI): Y8CWNJRCNN91
Parent UEI: V2PHZ2CSCH63
NSF Program(s): Chemistry of Life Processes
Primary Program Source: 01001415DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 1982, 9183
Program Element Code(s): 688300
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.049

ABSTRACT

The Chemistry of Life Processes Program in the Chemistry Division is funding Dr. Yi Lu of University of Illinois at Urbana-Champaign to study the dependence of the redox potential of metal centers in proteins on the secondary coordination sphere of the metal center. This effort is important because the redox potential of proteins is a property at the heart of many chemical and biological processes, ranging from electron transfer in photosynthesis and respiration, to catalysis in fuel cells and nitrogen fixation. Despite the importance of redox potentials, a comprehensive and systematic understanding of factors that control the redox potentials of the proteins, particularly those factors that do not perturb the primary coordination sphere of the metal centers, remains elusive. This project will contribute to filling this knowledge gap; the new knowledge will be applied in addressing interesting problems in chemistry and biology. The interdisciplinary research will be a ground for the sound training of students. The results of the research will be integrated in new and existing courses and in presentations to a broad range of audiences.

This research project will advance the fundamental understanding of the factors that affect the redox potential of metal centers in proteins. The new understanding will be applied in the synthesis of new water-soluble, stable redox agents for biochemical studies, which in turn will be used to study the transfer of electrons in the inverted regime of Marcus theory, and of biocatalysts whose activity is tuned by changes in their redox potential. The methods by which the redox potential will be rationally modified include point mutation directed exclusively to the second-coordination sphere of the metal, use of non-natural amino acids to change the steric and electronic properties of the metal site in ways not possible using natural amino acids, and protein directed evolution to afford the fast exploration of a relatively large sequence space.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 22)
Chakraborty, Saumen and Polen, Michael J. and Chacón, Kelly N. and Wilson, Tiffany D. and Yu, Yang and Reed, Julian and Nilges, Mark J. and Blackburn, Ninian J. and Lu, Yi "Binuclear Cu A Formation in Biosynthetic Models of Cu A in Azurin Proceeds via a Novel Cu(Cys) 2 His Mononuclear Copper Intermediate" Biochemistry , v.54 , 2015 10.1021/acs.biochem.5b00659 Citation Details
Farver, Ole and Hosseinzadeh, Parisa and Marshall, Nicholas M. and Wherland, Scot and Lu, Yi and Pecht, Israel "Long-Range Electron Transfer in Engineered Azurins Exhibits Marcus Inverted Region Behavior" The Journal of Physical Chemistry Letters , v.6 , 2015 10.1021/jz5022685 Citation Details
Flavia Nastri, Marco Chino, Ornella Maglio, Ambika Bhagi-Damodaran, Yi Lu, and Angela Lombardi "Design and Engineering of Artificial Oxygen-Activating Metalloenzymes" Chem. Soc. Rev. , v.45 , 2016 , p.5020
Hosseinzadeh, Parisa and Lu, Yi "Design and fine-tuning redox potentials of metalloproteins involved in electron transfer in bioenergetics" Biochimica et Biophysica Acta (BBA) - Bioenergetics , v.1857 , 2016 10.1016/j.bbabio.2015.08.006 Citation Details
Hosseinzadeh, Parisa and Tian, Shiliang and Marshall, Nicholas M. and Hemp, James and Mullen, Timothy and Nilges, Mark J. and Gao, Yi-Gui and Robinson, Howard and Stahl, David A. and Gennis, Robert B. and Lu, Yi "A Purple Cupredoxin from Nitrosopumilus maritimus Containing a Mononuclear Type 1 Copper Center with an Open Binding Site" Journal of the American Chemical Society , v.138 , 2016 10.1021/jacs.5b13128 Citation Details
Jing Liu, Jing, Katlyn Meier, Shiliang Tian, Jun-Long Zhang, Hongchao Guo, Charles Schulz, Howard Robinson, Mark Nilges, Eckard Münck, and Yi Lu "Redesigning a Blue Copper Azurin into a Redox-active Mononuclear Non-heme Iron Protein: Preparation and Study of Fe(II)M121E Azurin" J. Am. Chem. Soc. , v.136 , 2014 , p.12337
Jing Liu, Katlyn Meier, Shiliang Tian, Jun-Long Zhang, Hongchao Guo, Charles E Schulz, Howard Robinson, Mark J Nilges, Eckard Munck, Yi Lu "Redesigning the Blue Copper Azurin into a Redox-active Mononuclear Non-heme Iron Protein: Preparation and Study of Fe(II)-M121E Azurin" J. Am. Chem. Soc. , v.136 , 2014 , p.12337
Kevin M. Clark, Shiliang Tian, Wilfred A. van der Donk, and Yi Lu "Probing the role of the backbone carbonyl interaction with the CuA center in azurin by replacing the peptide bond with an ester linkage" Chem. Comm. , v.53 , 2017 , p.224
Liu, Jing and Meier, Katlyn K. and Tian, Shiliang and Zhang, Jun-long and Guo, Hongchao and Schulz, Charles E. and Robinson, Howard and Nilges, Mark J. and Münck, Eckard and Lu, Yi "Redesigning the Blue Copper Azurin into a Redox-Active Mononuclear Nonheme Iron Protein: Preparation and Study of Fe(II)-M121E Azurin" Journal of the American Chemical Society , v.136 , 2014 10.1021/ja505410u Citation Details
Ole Farver, Parisa Hosseinzadeh, Nicholas M. Marshall, Scot Wherland, Yi Lu, and Israel Pecht "Long-Range Electron Transfer in Engineered Azurins Exhibits Marcus Inverted Region Behavior" J. Phy. Chem. Lett. , v.6 , 2015 , p.100
Ole Farver, Parisa Hosseinzade, Nicholas M Marshall, Scot Wherland, Yi Lu, Israel Pecht "Long-range electron transfer in engineered azurins exhibits Marcus inverted region behavior" J. Phys. Chem. Lett , v.6 , 2015 , p.100
(Showing: 1 - 10 of 22)

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

  Redox reactions are at the heart of numerous biological functions and chemical transformations, from electron transfer (ET) in photosynthesis and respiration to catalytic activations of C-H bonds and other molecules. The redox potential (E°) is one of the most important parameter in determining the efficiency of reactions.  For example, with the global energy crisis, there is growing interest among all fields in science in making bio-inspired redox reagents for applications ranging from fuel cells to solar energy conversion. A critical obstacle to success is the availability of redox centers with tunable redox potentials to lower overpotentials and increase catalytic efficiency. Areas such as fuel cell research also often require redox agents that are stable in aqueous solution, agents which are relatively rare.

  For millions of years, biology has operated within the range of physiological E°s, defined by the highest E° (~ +1 V vs. SHE) at which water is oxidized, and the lowest E° (~ -1V) at which protons are reduced to H2.  Amazingly, nature has found a way to cover this wide range using a strikingly limited set of not only metal cofactors, but also protein folds. Despite many years of research into these proteins and efforts to change the E°, how the E°s can be tuned systematically in a wide range using the limited metal cofactors is still not well understood. An ultimate test of our understanding of this process is to design redox centers with the minimum number of metal cofactors and mutations that can cover the entire 2V range of physiological E°. We reported in this PNAS paper (doi: 10.1073/pnas.1515897112) the design of the protein azurin to cover a range from +970 mV to −954 mV vs. standard hydrogen electrode (SHE) by mutating only five residues and using two metal ions. Spectroscopic methods have revealed geometric parameters important for the high E°′.

  This ability to cover the entire range, which even surpasses the observed E°′ range for all ET proteins combined, using two metal ions and mutating only five residues in a single protein scaffold (Fig. 1) is a testimony to how much we now understand the structural features responsible for tuning E°′ of metalloproteins. Given the wide range of potentials attainable from a single protein possessing the same overall fold and surface properties, the azurin variants reported in this study may enable scientists and engineers to take advantage of these water-soluble redox agents for biochemical and biotechnological applications such as solar energy transfer and other alternative energy conversions. Because tuning the potentials of many inorganic, bioinorganic, and organometallic catalysts can result in catalysts with different oxidation states with dramatically different catalytic efficiency for different substrates, the knowledge gained from this study may also allow others to use the same principle to tune redox properties of numerous catalysts for even wider applications, such as small molecule activation and synthesis of important intermediates or products for pharmaceutical applications.

   This research has been supported by NSF through CHE 14-13328 to Yi Lu group at the University of Illinois at Urbana-Champaign, in collaboration with Ninian J. Blackburn’s group from Oregon Health and Science University, who provided x-ray absorption spectral analysis.

  What makes this work unique is we have achieved the ultimate challenge both highest E°′ and lowest E°′ under physiological conditions. Applying the principles demonstrated in this work in other systems can results in novel redox agents and catalysts with unprecedented properties.

   Furthermore, while a number of redox agents are available for applications in organic solvents, water-soluble and stable redox agents are quite limited. To overcome this limitation, we have made many azurin mutants with a wide range of Eº´ available as redox agents to the general scientific community through Kerafast.com (https://www.kerafast.com/product/2721/redox-potential-tuned-azurin-proteins). This NSF-funded research has expanded the number of water-soluble and stable redox agents significantly and will help many other chemists, biochemists and biophysics in their studies to advance many other areas of science and technology.


Last Modified: 08/18/2017
Modified by: Yi Lu

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