Award Abstract # 1129194
UBM-Institutional-Collaborative Research: Four College Biomath Consortium

NSF Org: DBI
Division of Biological Infrastructure
Recipient: THE TRUSTEES OF THE SMITH COLLEGE
Initial Amendment Date: August 4, 2011
Latest Amendment Date: August 4, 2011
Award Number: 1129194
Award Instrument: Standard Grant
Program Manager: Sally O'Connor
DBI
 Division of Biological Infrastructure
BIO
 Directorate for Biological Sciences
Start Date: September 1, 2011
End Date: August 31, 2017 (Estimated)
Total Intended Award Amount: $446,000.00
Total Awarded Amount to Date: $446,000.00
Funds Obligated to Date: FY 2011 = $446,000.00
History of Investigator:
  • Ileana Streinu (Principal Investigator)
    istreinu@smith.edu
  • Christophe Gole (Co-Principal Investigator)
  • Robert Dorit (Co-Principal Investigator)
Recipient Sponsored Research Office: Smith College
10 ELM ST
NORTHAMPTON
MA  US  01063-6304
(413)584-2700
Sponsor Congressional District: 02
Primary Place of Performance: Smith College
10 Elm Street
Northampton
MA  US  01063-6304
Primary Place of Performance
Congressional District:
02
Unique Entity Identifier (UEI): KRDJLRA9X6F3
Parent UEI:
NSF Program(s): INTERDISC TRNG IN BIO & MATH,
Transforming Undergrad Bio Ed
Primary Program Source: 01001112DB NSF RESEARCH & RELATED ACTIVIT
04001112DB NSF Education & Human Resource
Program Reference Code(s): 7317, 9178
Program Element Code(s): 731700, 797200
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

This proposal establishes the Four College Biomathematics Consortium: a collaboration among four undergraduate institutions (Smith College, Mount Holyoke College, Amherst College, and Hampshire College) with a long tradition of excellence and a commitment to research-centered education. Two of these institutions are women?s colleges. All four have a demonstrated commitment to expanding opportunities for women, underrepresented groups and first-generation students in scientific fields.

The Consortium will help train the next generation of biomathematicians. A two-year research-intensive program will be developed, building on a strong existing infrastructure for cross-campus collaborations, in which student teams move through a series of curricular offerings and mentored research opportunities. The emphasis throughout is on: a) a succession of developmentally appropriate courses and research opportunities; b) a team-centered approach that unites student teams and mentoring teams in several multi-year research collaborations; and c) the creation of a multi-layered cohort of biomathematics students at various stages of training. Led by mentoring teams composed of both life scientists and mathematicians, the students will explore problems at all scales of biological organization, ranging from the intricacies of protein folding to the complexities of water and material flows in forest ecosystems. These projects share a unifying theme,the consideration of potential and realized shape spaces, and emphasize geometric approaches to the exploration of biological problems.

The program advances the national STEM agenda by training 50 undergraduates in biomathematics and by generating online pedagogical materials (curricula, exercises and training modules) that can be exploited by the broader community. The program will also serve as a potential exportable model for multi-institutional collaboration in the training of undergraduates in biomathematics and other emerging scientific fields.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 16)
Amalia Driller-Colangelo, Karen Chau; Jessica Morgan, Nathan D. Derr "Cargo rigidity affects the sensitivity of dynein ensembles to individual motor pausing" Cytoskeleton , v.73 , 2016 , p.693 10.1002/cm.21339
Bowers, John C. and John, Rose Therail and Streinu, Ileana "Managing Reproducible Computational Experiments with Curated Proteins in KINARI-2" Proc. Bioinformatics Research and Applications (ISBRA'15), Lecture Notes in ComputerScience , v.9096 , 2015 , p.72--83 10.1007/978-3-319-19048-8_7
Ciprian Borcea and Ileana Streinu "Geometric auxetics" Proc. of the Royal Society A , v.471 , 2015 , p.20150033 10.1098/rspa.2015.0033
Ciprian S. Borcea and Ileana Streinu "New principles for auxetic periodic design." SIAM Journal of Applied Algebra andGeometry , v.1 , 2017 , p.442 10.1137/16M1088259
Emily Flynn and Ileana Streinu "Consistent visualization of multiple rigid domain decompositions of proteins" Proc. Bioinformatics Research and Applications (ISBRA'15), Lecture Notes in Computer Science , v.9683 , 2016 , p.151?162 10.1007/978-3-319-38782-6_13
Emily Flynn and Ileana Streinu "Matching multiple rigid domain decompositions of proteins" IEEE Transactions on Nanobioscience , v.16 , 2017 , p.81 10.1109/TNB.2017.2660538
Golé, C., Dumais, J. and Douady, S. "Fibonacci and Quasi-symmetric Phyllotaxis (Part I): Why?" Acta Soc BotPol. , v.85 , 2016 , p.https://d
Ileana Streinu "Large scale rigidity-based flexibility analysis of biomolecules" Structural Dynamics , v.3 , 2016 , p.012005 10.1063/1.4942414
Jordan Crouser, Morganne Crouser, Ji Won Chung, Ji Young Yun, Kelly Pien, Subashiniu Sridhar, Isha Raut "DSMVis: Interactive Visual Exploration of the DSM-5 for Mental Health Providers" IEE VIS 2017 for the VAST track , 2017
K. Johnson, C. Moriarty, N. Tania, A. Ortman, K. DiPietrantonio, J. Eisenman, R. Bernardos, S. Krikorian, C. Golé, and M.J.F. Barresi "Kif11 dependent cell cycle progression in radial glial cells is required for proper neurogenesis in the zebrafish neural tube." Developmental Biology , v.387 , 2014 , p.73
M. Lague, N. Tania, J. Heath, L. Edelstein-Keshet "The effect of facilitation and competition on group foraging in patches." Journal of Theoretical Biology , v.310 , 2012 , p.88-96
(Showing: 1 - 10 of 16)

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

The explosion of knowledge and data in the life sciences -- produced at all scales of biological organization, from the molecular to the global-- is one of the leading phenomena of 21st century biological science. Extracting meaning from these complex systems, and turning them into useful descriptions (of, for example, the fine structure of protein active sites or the climate impacts of changes in seasonal patterns) demands mathematical thinking, mathematical modeling and new mathematical tools.  A new field is emerging at the interface of the life sciences and the quantitative sciences, but real progress in that field will not come from simply bringing traditionally trained mathematicians together with traditionally trained scientists. Instead, we need a new cohort of biomathematicians, explicitly trained at that interface.
To build that cohort, the Four College Biomathematics Consortium (4CBC), supported by the NSF Undergraduate Biomathematics training grant, together with the Five Colleges, Inc., created an active biomath community across four campuses: Smith College, Amherst College, Mount Holyoke College and Hampshire College.  During the 6 years of the grant, the consortium developed 65 research projects involving collaboration between faculty and students across mathematical and life sciences. These projects engaged 77 funded research students and another approximately 47 students for 1-5 semester and/or summer work.  Projects spanned the range of biological scales from molecular level studies (examples include the kinetics of protein folding and modeling dynein motor protein transport dynamics), to GIS based modeling of infectious disease transmission, to the geometry of an ecological arms race. The projects led to over 40 undergraduate honors theses and 17 peer-reviewed publications. Of the 41 program fellows that have graduated, 11 are pursuing PhD or MD/PhD programs, 5 have pursued Master’s degrees in biomath related fields, 13 are employed in biological sciences research laboratories and 6 are engaged in technical fields. 
The 4CBC institutionalized the Biomathematical Sciences in the Five Colleges (the previous four colleges and the University of Massachusetts, Amherst) by creating the Five College Biomathematical Sciences Certificate Program.  Students in the certificate program complement their major field of focus (life sciences or quantitative sciences) through coursework in the reciprocal field.  They also engage in research projects that bridge life sciences and quantitative sciences, culminating in a capstone project that integrates their coursework and experiential learning. This program includes the gateway Frontiers in Biomathematics course, developed through the grant collaborations. The course introduces students to modeling software (Matlab or R) during a 4-week bootcamp.  This is followed by three-week modules that introduce students to two biomath research questions to which they can apply the modeling tools they have learned during the bootcamp.  These modules often include data collection and lab work and serve to recruit students to longer term participation in the research projects. The certificate program together with the Frontiers course are maintained by the biomath community created through the 4CBC grant.


Last Modified: 11/16/2017
Modified by: Christophe Gole

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