Award Abstract # 1060300
Waterborne chemical cues in the plankton: a systems biology approach

NSF Org: OCE
Division Of Ocean Sciences
Recipient: GEORGIA TECH RESEARCH CORP
Initial Amendment Date: March 14, 2011
Latest Amendment Date: March 14, 2011
Award Number: 1060300
Award Instrument: Standard Grant
Program Manager: David Garrison
OCE
 Division Of Ocean Sciences
GEO
 Directorate for Geosciences
Start Date: October 1, 2011
End Date: September 30, 2015 (Estimated)
Total Intended Award Amount: $545,870.00
Total Awarded Amount to Date: $545,870.00
Funds Obligated to Date: FY 2011 = $545,870.00
History of Investigator:
  • Julia Kubanek (Principal Investigator)
    julia.kubanek@biology.gatech.edu
  • Facundo Fernandez (Co-Principal Investigator)
Recipient Sponsored Research Office: Georgia Tech Research Corporation
926 DALNEY ST NW
ATLANTA
GA  US  30318-6395
(404)894-4819
Sponsor Congressional District: 05
Primary Place of Performance: Georgia Institute of Technology
225 NORTH AVE NW
ATLANTA
GA  US  30332-0002
Primary Place of Performance
Congressional District:
05
Unique Entity Identifier (UEI): EMW9FC8J3HN4
Parent UEI: EMW9FC8J3HN4
NSF Program(s): BIOLOGICAL OCEANOGRAPHY
Primary Program Source: 01001112DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 9117, 9169, EGCH
Program Element Code(s): 165000
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.050

ABSTRACT

Intellectual merit: Competition is a major force structuring communities, including the marine plankton. The release of compounds that inhibit competitors, a process known as allelopathy, is hypothesized to be important among phytoplankton, especially for species that compete poorly for resources yet form dense blooms. Ecological interactions involving the toxic red tide dinoflagellate Karenia brevis present an ideal system for understanding chemically mediated interactions. Blooms of this species occur frequently in accessible coastal areas of the Gulf of Mexico, causing massive fish kills and contaminating shellfish. The dramatic consequences of these blooms motivate the following questions. What strategies does this harmful alga use in competition with other phytoplankton? What lethal and sub-lethal effects are experienced by competitors? How do phytoplankton respond, resist, and detoxify their surroundings? What roles do chemical cues play in these interactions? How are different phytoplankton communities affected by allelopathy?

Previous studies have shown that K. brevis is allelopathic to several naturally co-occurring phytoplankton species, but compounds other than the known neurotoxic brevetoxins produced by K. brevis generally were responsible. This species produces allelopathic mixtures of unstable, 500-1000 Da organic compounds which cause reduced photosystem II activity and disrupt cell membranes of sensitive species, whereas some other competitors remain unaffected. Moreover, natural blooms of K. brevis were allelopathic to the competing diatom Skeletonema grethae. This species, in turn, appeared to influence the chemistry of K. brevis, reducing its allelopathic effects. Death is a rare outcome of K. brevis allelopathy; more subtle, non-lethal responses have predominated. Overall, environmental context may be critical for predicting what ecologically important chemical mediators are released into marine systems and the consequences of these compounds to plankton communities.

The project will:
1) Characterize the exudate metabolome among K. brevis samples of varying allelopathic potency. Exudates of K. brevis strains and natural bloom samples will be studied by mass spectrometry (MS) and nuclear magnetic resonance (NMR) metabolomics to pinpoint candidate chemical cues involved in competition. Karenia brevis protein expression will be examined by MS proteomics to test whether K. brevis up- or down-regulates key proteins involved in pathway networks in response to challenges by competitors.
2) Seek to understand sub-lethal metabolic impacts of exposure to allelopathy on target phytoplankton, by studying responses of phytoplankton to K. brevis allelopathy by MS-based metabolomics and proteomics. This work will provide an unbiased approach to determining molecular targets of allelopathy and allow testing of whether sub-lethal responses to allelopathy include suppressed fundamental cellular functioning and up-regulated pathways related to stress and detoxification.
3) Relate allelopathic sensitivity to metabolic responses in target phytoplankton, by comparing metabolomic and proteomic changes of sensitive versus resistant competitors to K. brevis allelopathy. The expectation is that more resistant species experience enhancement of detoxification pathways and more robust, unaffected cellular function relative to competitors most sensitive to allelopathy.
4) Determine how estuarine and off-shore phytoplankton differ in their physiological responses to allelopathy, because allelopathy may be more important for maintaining dense blooms in near-shore waters than in the initiation of blooms off-shore.

Broader impacts: Phytoplankton blooms can be devastating to local economies and pose human health risks. The discovery of new chemically mediated interactions and metabolic responses in the marine plankton could eventually lead to prediction and control strategies to alleviate the harmful consequences of these blooms. Continued effort to characterize mixtures of allelopathic compounds and determine their effects on competing species could lead to biodegradable treatments for reducing phytoplankton or microbial growth in aquatic and terrestrial environments. This study builds on past successes, applying lessons learned from chemistry about ecological processes and using ecological insights to discover unique natural products with important biological functions. This project will provide training for 3 PhD students and several undergraduates. The PhD students will expand their roles in previous educational training activities, participating in a "Tech for Teaching" program that places Georgia Tech students in Atlanta-area public high schools with ~99% minority students. These African-American students will learn about the question-asking nature of science and issues surrounding red tides in the U.S., as well as associated connections to human impacts on marine environments, exciting them about science by connecting it with their daily lives.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 17)
Dove ADM, Leisen J, Zhou M, Byrne J, Lim-Hing K, Webb H, Gelbaum L, Viant M, Kubanek J, Fernandez FF "Biomarkers of whale shark health ? a metabolomic approach" PLoS ONE , v.7 , 2012 , p.e49379 10.1371/journal.pone.0049379
Dove ADM, Leisen J, Zhou M, Byrne J, Lim-Hing K, Webb H, Gelbraum L, Viant M, Kubanek J, Fernandez FF "Biomarkers of whale shark health - a metabolomics approach." PLoS ONE , v.7 , 2012 , p.e49379 doi:10.1371/journal.pone.0049379
Dove, Alistair D. M.; Leisen, Johannes; Zhou, Manshui; Byrne, Jonathan J.; Lim-Hing, Krista; Webb, Harry D.; Gelbaum, Leslie; Viant, Mark R.; Kubanek, Julia; Fernandez, Facundo M. "Biomarkers of Whale Shark Health: A Metabolomic Approach" PLOS ONE , v.7 , 2012 , p.e49379 10.1371/journal.pone.0049379
Kubanek J "There?s something in the water: the future of marine chemical ecology" Journal of Chemical Ecology , v.40 , 2014 , p.218 10.1007/s10886-014-0394-4
Poulson-Ellestad K, Jones C, Roy J, Viant MR, Fernandez FM, Kubanek J, Nunn B. "Metabolomics and proteomics reveal impacts of chemically mediated competition on marine plankton" Proceedings of the National Academy of Sciences , v.111 , 2014 , p.9009 10.1073/pnas.1402130111
Poulson-Ellestad KL, Jones CM, Roy J, Viant MR, Fernandez FM, Kubanek J, Nunn BL "Metabolomics and proteomics reveal impacts of chemically mediated competition on marine plankton" Proceedings of the National Academy of Sciences , v.111 , 2014 , p.9009 doi: 10.1073/pnas.1402130111
Poulson-Ellestad K, McMillan E, Montoya J, Kubanek J "Are offshore phytoplankton susceptible to Karenia brevis allelopathy?" Journal of Plankton Research , v.36 , 2014 , p.1344 10.1093/plankt/fbu064
Poulson-Ellestad K, McMillan E, Montoya J, Kubanek J "Are offshore phytoplankton susceptible to Karenia brevis allelopathy?" Journal of Plankton Research , v.36 , 2014 , p.1344 doi: 10.1093/plankt/fbu064
Roy J, Poulson-Ellestad K, Sieg RD, Poulin R, Kubanek J "Chemical ecology of the marine plankton" Natural Product Reports , v.30 , 2013 , p.1364 DOI: 10.1039/C3NP70056A
Selander E, Kubanek J, Hamberg M, Andersson MX, Cervin G, Pavia H "Predator lipids induce paralytic shellfish toxins in bloom-forming algae" Proceedings of the National Academy of Sciences , v.112 , 2015 , p.6395 doi: 10.1093/icb/icv058
Sieg RD, Kubanek J "Chemical ecology of marine angiosperms: opportunities at the interface of marine and terrestrial systems" Journal of Chemical Ecology , v.39 , 2013 , p.687 10.1007/s10886-013-0297-9
(Showing: 1 - 10 of 17)

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

Microscopic marine algae (phytoplankton) are responsible for much of Earth’s photosynthesis, serving as the base of a massive food web supporting fisheries. Phytoplankton compete for limiting resources, with some species producing noxious compounds that kill competitors or inhibit their growth – a process known as allelopathy. The red tide dinoflagellate Karenia brevis is one such allelopathic species, whose competitive strategy may play a role in the maintenance of its large blooms which produce potent neurotoxins that negatively impact coastal marine ecosystems. K. brevis is variably allelopathic to multiple competitors, typically causing sublethal suppression of growth. We employed new systems biology tools – metabolomics and proteomics – to investigate the role of chemically mediated ecological interactions between K. brevis and two competitors, the diatoms Asterionellopsis glacialis and Thalassiosira pseudonana. The impact of K. brevis allelopathy on competitor physiology was reflected in the concentrations of metabolites and expressed proteomes of both diatoms, although the diatom that co-occurs with K. brevis blooms (A. glacialis) exhibited more robust metabolism in response to K. brevis. In the more sensitive competitor T. pseudonana, cells suffered compromised energy metabolism and disrupted cellular protection mechanisms such as altered cell membrane components, inhibited osmoregulation, and increased oxidative stress (see Image 1). The observed partial resistance of A. glacialis to allelopathy may be a result of its frequent exposure to K. brevis blooms in the Gulf of Mexico. Identification of the unique metabolites will give insights into metabolic pathways affected by K. brevis based allelopathy and also into the dynamics of bloom formation, propagation, and termination.

In terms of method development for the field of ocean sciences, we have shown that metabolomics and proteomics can together be used to explore ecological interactions among planktonic organisms.  While these systems biology approaches have been well applied in medical research, and each method in isolation is beginning to be more common in ecology and marine science research, a lack of communication among specialists of these techniques has previous prevented a more comprehensive application in biological oceanography. Marine ecologists and biological oceanographers are curious about the role of allelopathy in competition among phytoplankton. Our project contributes to an overall appreciation for the importance of this type of interaction in the marine plankton.

Data from this project are shared in multiple ways: project goals, field data from cruises, metabolomics and proteomics data are publicly available via http://www.bco-dmo.org/project/528925 and via publicly accessible links within that BCO-DMO site.  Data were analyzed, interpreted, and the results summarized in eight manuscripts published in the peer-reviewed scientific literature.  The research was shared publicly with the scientific community as part of eleven conference presentations.

Several activities associated with this project contributed to the broader impacts of this project. Co-PI Brook Nunn held a PAWS on SCIENCE workshop for 3 days at the Pacific Science Center in Seattle.  Dr. Nunn led the workshop with the help of graduate and undergraduate students from University of Washington teaching the basics of chemistry, chromatography and mass spectrometry to hundreds of children.  PAWS on SCIENCE received over 10,000 people.  This outreach and teaching tool was then taken to a similar event in Yakima.  The outreach program in Yakima was specifically designed to reach underpr...

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