Award Abstract # 0237483
The Characterization of the Methanothermobacter Thermautotrophicus Origin of Replication and its Associated Proteins

NSF Org: MCB
Division of Molecular and Cellular Biosciences
Recipient:
Initial Amendment Date: March 5, 2003
Latest Amendment Date: February 22, 2007
Award Number: 0237483
Award Instrument: Continuing Grant
Program Manager: Patrick P. Dennis
MCB
 Division of Molecular and Cellular Biosciences
BIO
 Directorate for Biological Sciences
Start Date: March 1, 2003
End Date: February 29, 2008 (Estimated)
Total Intended Award Amount: $0.00
Total Awarded Amount to Date: $402,000.00
Funds Obligated to Date: FY 2003 = $155,000.00
FY 2004 = $120,000.00

FY 2005 = $127,000.00
History of Investigator:
  • Zvi Kelman (Principal Investigator)
    zkelman@umd.edu
Recipient Sponsored Research Office: University of Maryland Biotechnology Institute
701 East Pratt St., Suite 200
Baltimore
MD  US  21202-3101
(410)385-6330
Sponsor Congressional District: 07
Primary Place of Performance: Center for Advanced Research in Biotechnology
9600 Gudelsky Drive
Rockville
MD  US  20850-3479
Primary Place of Performance
Congressional District:
08
Unique Entity Identifier (UEI): C8WDKMCD4K65
Parent UEI:
NSF Program(s): INSTRUMENTAT & INSTRUMENT DEVP,
Genetic Mechanisms
Primary Program Source: app-0103 
app-0104 

app-0105 
Program Reference Code(s): 1108, 1156, 7248, 9104, 9177, 9183, BIOT, SMET
Program Element Code(s): 110800, 111200
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

Every proliferating cell must duplicate its genetic information accurately and only once per cell cycle. Any process that falls short of or exceeds these limits results in cell death or abnormal proliferation. The long-term goal of this research program is to understand the mechanisms governing DNA replication in eukarya, and this research project will focus specifically on the origin of replication, a specific location on the chromosome where replication initiates. Whereas DNA replication has been well characterized in bacteria, viruses and bacteriophages, many aspects of the process in eukarya, particularly in the initiation phase, are still unknown. The complex eukaryotic cell cycle entails numerous regulatory signals and factors from the first step of origin recognition to the final step of cell division, making it difficult to study individual components and events. An organism that may help to circumvent some of the complexity of eukaryotic replication is a prokaryote with eukaryotic-like replication processes,the archaeon Methanothermobacter thermautotrophicus (Mth). Archaeal DNA replication appears to be more similar to the eukaryal rather than the bacterial process. However, the archaeal DNA replication apparatus appears to require fewer proteins and complexes. Thus, archaea may provide a good model system for understanding the enzymology of eukaryotic replication. The research will focus on the mechanisms of the initiation of DNA replication in Mth.Both wild-type and mutant recombinant proteins will be used in in vitro experiments designed to:1) isolate and identify the origin binding proteins,2)
understand how the origin is recognized and bound by the initiation proteins; and 3) identify the functional motifs in the archaeal origin. A long-term goal is to develop an in vitro replication system for Mth; the information gained from these biochemical studies will be directly applicable to such a system.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Grabowski, B; Kelman, Z "Archaeal DNA replication: Eukaryal proteins in a bacterial context" ANNUAL REVIEW OF MICROBIOLOGY , v.57 , 2003 , p.487 View record at Web of Science 10.1146/annurev.micro.57.030502.09070
Kelman, LM; Kelman, Z "Archaea: an archetype for replication initiation studies?" MOLECULAR MICROBIOLOGY , v.48 , 2003 , p.605 View record at Web of Science
Kelman, Z; Hurwitz, J "Structural lessons in DNA replication from the third domain of life" NATURE STRUCTURAL BIOLOGY , v.10 , 2003 , p.148 View record at Web of Science 10.1038/nsb0303-14
Kelman, Z; White, MF "Archaeal DNA replication and repair" CURRENT OPINION IN MICROBIOLOGY , v.8 , 2005 , p.669 View record at Web of Science 10.1016/j.mib.2005.10.00
Lim, K; Tempczyk, A; Parsons, JF; Bonander, N; Toedt, J; Kelman, Z; Howard, A; Eisenstein, E; Herzberg, O "Crystal structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function coexpressed with the recombinational DNA repair protein RecR" PROTEINS-STRUCTURE FUNCTION AND GENETICS , v.50 , 2003 , p.375 View record at Web of Science 10.1002/prot.1029
Praetorius-Ibba, M; Rogers, TE; Samson, R; Kelman, Z; Ibba, M "Association between archaeal prolyl- and leucyl-tRNA synthetases enhances tRNA(Pro) aminoacylation" JOURNAL OF BIOLOGICAL CHEMISTRY , v.280 , 2005 , p.26099 View record at Web of Science 10.1074/jbc.M50353920
Shin, J.-H., Grabowski, B., Kasiviswanathan, R., Bell, S.D. and Kelman, Z. "Regulation of minichromosome maintenance (MCM) helicase activity by Cdc6" Journal of Biological chemistry , v.278 , 2003 , p.38059
Shin, JH; Jiang, Y; Grabowski, B; Hurwitz, J; Kelman, Z "Substrate requirements for duplex DNA translocation by the eukaryal and archaeal minichromosome maintenance helicases" JOURNAL OF BIOLOGICAL CHEMISTRY , v.278 , 2003 , p.49053 View record at Web of Science 10.1074/jbc.M30859920
Shin, J.-H., Mauro, R., Melamud, E. and Kasiviswanathan, R. "Cloning and partial characterization of the Methanococcoides burtonii minichromosome maintenance (MCM) helicase" BIOS , v.77 , 2006 , p.37
Vivona, JB; Kelman, Z "The diverse spectrum of sliding clamp interacting proteins" FEBS LETTERS , v.546 , 2003 , p.167 View record at Web of Science

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