Award Abstract # 0225665
ITR Collaborative Research: Enabling the Science Environment for Ecological Knowledge

NSF Org: DBI
Division of Biological Infrastructure
Recipient: UNIVERSITY OF NEW MEXICO
Initial Amendment Date: September 12, 2002
Latest Amendment Date: August 2, 2006
Award Number: 0225665
Award Instrument: Continuing Grant
Program Manager: P. Bryan Heidorn
DBI
 Division of Biological Infrastructure
BIO
 Directorate for Biological Sciences
Start Date: October 1, 2002
End Date: September 30, 2008 (Estimated)
Total Intended Award Amount: $4,439,765.00
Total Awarded Amount to Date: $4,439,765.00
Funds Obligated to Date: FY 2002 = $948,248.00
FY 2003 = $857,807.00

FY 2004 = $889,623.00

FY 2005 = $926,056.00

FY 2006 = $818,031.00
History of Investigator:
  • William Michener (Principal Investigator)
    wmichene@unm.edu
  • Robert Waide (Co-Principal Investigator)
  • James Brunt (Co-Principal Investigator)
  • Kristin Vanderbilt (Co-Principal Investigator)
  • Deana Pennington (Co-Principal Investigator)
Recipient Sponsored Research Office: University of New Mexico
1 UNIVERSITY OF NEW MEXICO
ALBUQUERQUE
NM  US  87131-0001
(505)277-4186
Sponsor Congressional District: 01
Primary Place of Performance: University of New Mexico
1 UNIVERSITY OF NEW MEXICO
ALBUQUERQUE
NM  US  87131-0001
Primary Place of Performance
Congressional District:
01
Unique Entity Identifier (UEI): F6XLTRUQJEN4
Parent UEI:
NSF Program(s): Population & Community Ecology,
POP & COMMUNITY ECOL PROG,
ITR LARGE GRANTS,
NEON-Concept & Development,
EPSCoR Co-Funding
Primary Program Source: app-0102 
app-0103 

app-0104 

app-0105 

app-0106 

app-0403 
Program Reference Code(s): 9184, 1640, BIOT, 9150, 9104
Program Element Code(s): 112800, 118200, 168800, 735000, 915000
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT


Understanding and sustaining the natural world in the 21st century depends on improving our capacity to access ecological, earth science, and human-dimension data; mining these data for new knowledge; and conveying new insights to decision-makers and the general public. Computer science and information technology research can effectively address many of these issues and advance our ability to conduct ecological science. This multidisciplinary research investigation will create a "Science Environment for Ecological Knowledge" (SEEK)-an information technology framework and infrastructure that will be used to derive and extend ecological knowledge by facilitating the discovery, access, integration, interpretation, and analyses of distributed ecological information. SEEK will provide for the integration of local desktop data with a larger network of data and analytical tools, enabling ecologists and other researchers to tackle complex research problems that were hitherto intractable.
The SEEK initiative stands on the foundation of substantial and productive NSF investment in ecological and biodiversity informatics and it brings together four highly collaborative, forward-looking institutions in a partnership committed to inventing and supporting a global computing infrastructure for environmental biology. The project involves a multidisciplinary team of computer scientists, ecologists and technologists from the Partnership for Biodiversity Informatics (PBI), a consortium comprising the National Center for Ecological Analysis and Synthesis (NCEAS); the San Diego Supercomputer Center (SDSC); the University of Kansas (KU), and the University of New Mexico (UNM)) and partnering institutions (Arizona State University, University of North Carolina, University of Vermont, and Napier University in Scotland).
This five-year initiative will lead to fundamental improvements in how researchers can 1) gain global access to data and information, 2) rapidly locate and utilize distributed computational services, and 3) exercise powerful new methods for capturing, reproducing, and extending the analysis process itself. SEEK will also specifically provide ecologists and other researchers access to a large-scale network of information resources and computational services, via powerful data discovery and analysis tools that operate from desktop computers. These capabilities will significantly build research capacity to more effectively address global research, management and policy issues in environmental biology that increasingly require much more efficient, automated access to distributed and heterogeneous data.
A multi-faceted approach will be employed to insure that the research products, software, and information technology infrastructure resulting from SEEK optimally benefit science, education, and the public. Outreach includes community involvement, a WWW portal, informatics training, and an innovative annual symposium and training program that focuses on information technology transfer to young investigators and students, particularly those from underrepresented groups.
In the information economy, access to information for knowledge creation and decision-making is as valuable as the information itself. This project will enable bringing the intellectual content of biodiversity and ecological information into currency for science and society. Examples of significant project outcomes include: (i) revolutionizing discovery, access to and integration of ecological, earth, and human dimension data and information through the SEEK infrastructure; (ii) developing intelligent analytical tools and infrastructure to support the needs of scientists, decision-makers, and the general public; (iii) education and training of the next generation of ecologists in information technology skills; and (iv) improving the opportunities for scientists, resource managers, policy makers, and the public to make scientifically-informed decisions about the environment by expanding access to ecological data, information, and knowledge.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 165)
Anderson, R. P., D. Lew, and A. T. Peterson "Evaluating predictive models of species' distributions: Criteria for selecting optimal models." Ecological Modelling, , v.162 , 2003 , p.211
Altintas, I., A. Birnbaum, K. Baldridge, W. Sudholt, M. Miller, C. Amoreira, Y. Potier, and B. Ludaescher. "A Framework for the Design and Reuse of Grid Workflows" Intl. Workshop on Scientific Applications on Grid Computing , v.SAG'04 , 2005 , p.3458
Altintas I, C. Berkley, E. Jaeger, M. Jones, B. Ludaescher, and S. Mock "Towards a grid enabled system for scientific workflows." Workshop on Workflow in Grid Systems, GlobalGrid Forum (GGF10),Berlin, Germany , 2004 , p.10
Altintas, I., C. Berkley, E. Jaeger, M. Jones, B. Ludaescher, S. Mock "Kepler: An Extensible System for Design and Execution of Scientific Workflows." 16th International Conference on Scientific and Statistical Database Management. , v.P2146 , 2004 , p.2146
Linke, S., Norris, R.H., Faith, D.P. and Stockwell, D "ANNA: A new prediction method for bioassessment programs." Freshwater Biology , v.50 , 2005 , p.147
Arcot Rajasekar, Michael Wan and Reagan Moore,Arun Jagatheesan, and George Kremenek "Real-life Experiences with Data Grids: Case Studies in using the SRB" The 6th International Conferenceon High Performance Computing (HPCAsia-2002) Bangalore, India, December 16-19, 2002 , 2002 , p.1
Athanasiadis, I., F. Villa, A. Rizzoli "Enabling knowledge-based software entgineering through semantic object-relational mappings." 4th European Semantic Web Conference , 2007
Athanasiadis, I., F. Villa, A. Rizzoli "Ontologies, Javabeans and relational databases for enabling semantic linking." IEEE Workshop on Development and Application of Knowledge Based Software Engineering Tools (KASET) , 2007
Balmin. A, Y. Papakonstantinou, V. Vianu "Incremental Validation of XML Documents" Invited to special issue of ACM Transactions on Database Systems(TODS) , v.29 , 2004 , p.710
Berkley, C., S. Bowers, M. Jones, B. Ludaescher, M. Schildhauer, and J. Tao "Incorporating Semantics in Scientific Workflow Authoring" 17th International Conference on Scientific and Statistical Database Management. IEEE , 2005
B. Ludaescher, and A. Nash "Web service composition through declarative queries: The case of conjunctive queries with union and negation." In: 20th Intl. Conf. on Data Engineering (ICDE) , 2004 , p.ICDE
(Showing: 1 - 10 of 165)

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