Award Abstract # 2344731
CRII: SCH: Domain-guided Machine Learning for Clinical Decision Support in Epilepsy

NSF Org: IIS
Division of Information & Intelligent Systems
Recipient: REGENTS OF THE UNIVERSITY OF MINNESOTA
Initial Amendment Date: August 31, 2023
Latest Amendment Date: August 31, 2023
Award Number: 2344731
Award Instrument: Standard Grant
Program Manager: Wendy Nilsen
wnilsen@nsf.gov
 (703)292-2568
IIS
 Division of Information & Intelligent Systems
CSE
 Directorate for Computer and Information Science and Engineering
Start Date: September 1, 2023
End Date: August 31, 2024 (Estimated)
Total Intended Award Amount: $174,998.00
Total Awarded Amount to Date: $122,214.00
Funds Obligated to Date: FY 2021 = $122,214.00
History of Investigator:
  • Yogatheesan Varatharajah (Principal Investigator)
    yvaratha@umn.edu
Recipient Sponsored Research Office: University of Minnesota-Twin Cities
2221 UNIVERSITY AVE SE STE 100
MINNEAPOLIS
MN  US  55414-3074
(612)624-5599
Sponsor Congressional District: 05
Primary Place of Performance: University of Minnesota-Twin Cities
200 OAK ST SE
MINNEAPOLIS
MN  US  55455-2009
Primary Place of Performance
Congressional District:
05
Unique Entity Identifier (UEI): KABJZBBJ4B54
Parent UEI:
NSF Program(s): Smart and Connected Health
Primary Program Source: 01002122DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 8018, 8228
Program Element Code(s): 801800
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.070

ABSTRACT

Despite the nationwide shortage of neurologists, present-day neurological care relies heavily on time-consuming visual review of patient data by trained staff. This is particularly emphasized in the field of epileptology where epileptologists spend a substantial amount of their time on visually reviewing and interpreting lengthy multi-channel time series of brain electrical activity, called electroencephalography (EEG). This burden not only contributes to the escalation of epileptologist burnout, but also introduces reviewer bias and potential errors in clinical decisions. The goal of this proposal is to develop a machine-learning (ML)-based decision support framework that works together with epileptologists and focuses their attention to actionable information. We will leverage the computing expertise of Illinois and the clinical domain expertise of our collaborators at the Mayo Clinic and demonstrate significant innovations across the data-science lifecycle to achieve the aforementioned goal. The data and the methods utilized in this research will serve as examples in advanced interdisciplinary classes and training healthcare professionals. We also believe that the natural appeal of healthcare applications will stimulate the interest of undergraduates and underrepresented minorities.

This research will develop a set of novel domain-guided analytical methods to process time-series EEG data, extract actionable information and provide clinical decision support for diagnosing epilepsy. The intellectual merit of the proposed research is in addressing an unmet need in the field of epileptology through the development of novel explainable machine learning architectures guided by clinical domain expertise. Our proposed work includes, a) development of a fully automated and efficient EEG preprocessing pipeline by leveraging the cheap inference capability of deep learning-based approaches; b) designing novel ML models, guided by domain expertise, that capture the spatio-temporal dynamics of EEG data; c) interpretation of model predictions and quantification of prediction uncertainty for clinical decision support; and d) demonstration of the framework in the real world by developing a robust analytical tool to augment expert review of EEGs and improve the sensitivity of epilepsy diagnosis.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Gupta, Teja and Wagh, Neeraj and Rawal, Samarth and Berry, Brent and Worrell, Gregory and Varatharajah, Yogatheesan "Tensor Decomposition of Large-scale Clinical EEGs Reveals Interpretable Patterns of Brain Physiology" 2023 11th International IEEE/EMBS Conference on Neural Engineering (NER) , 2023 https://doi.org/10.1109/NER52421.2023.10123800 Citation Details
Li, Wentao and Varatharajah, Yogatheesan and Dicks, Ellen and Barnard, Leland and Brinkmann, Benjamin H and Crepeau, Daniel and Worrell, Gregory and Fan, Winnie and Kremers, Walter and Boeve, Bradley and Botha, Hugo and Gogineni, Venkatsampath and Jones, "Data-driven retrieval of population-level EEG features and their role in neurodegenerative diseases" Brain Communications , v.6 , 2024 https://doi.org/10.1093/braincomms/fcae227 Citation Details

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

Despite the nationwide shortage of neurologists, the present-day neurological care relies heavily on time-consuming visual review of patient data by trained neurologists. This is particularly emphasized in the field of epileptology where epileptologists spend a substantial amount of their time on visually reviewing and interpreting lengthy multi-channel time series of brain electrical activity, called electroencephalography (EEG). This burden not only contributes to the escalation of epileptologist burnout, but also introduces reviewer bias and potential errors in clinical decisions. In fact, several studies have reported that the inter-reviewer agreement in reviewing EEGs is surprisingly poor and that the sensitivity of EEG-based expert visual diagnosis of epilepsy remains at 50%. As such, the field of neurology needs solutions that can, a) augment expert visual review of EEGs, b) reduce the workload, and c) enhance the reliability, reproducibility, and scalability of EEG review.

 

This project focused on developing a machine-learning (ML)-based decision support framework to actionable information extracted from lengthy EEG recordings using domain-guided machine learning. We successfully demonstrated the value of this framework by introducing significant innovations across the data-science lifecycle and by evaluating its utility in diagnosing epilepsy and cognitive diseases. Our technical innovations included, a) development of domain-guided and interpretable ML methods to augment EEG review and analysis; b) development of automated natural language processing tools to parse EEG reports and generate useful metadata; and c) developing novel self-supervised pretraining and curriculum learning approaches for EEG ML model training. We also collaborated with clinicians at the Mayo Clinic and the Mayo Clinic Neurology Artificial Intelligence program to demonstrate the clinical value using real-world clinical data collected from patients with various neurological diseases. Overall, this framework reduces the need for visual review of EEG data and increases the availability of clinicians to patient care.

 

This award was used to partially support two PhD students during the initial years of their training. We also engaged with UIUC undergraduate students and medical students at the Carle Illinois College of Medicine to expose them to novel ML methods in clinical applications. In addition, we participated in the summer K-12 research program called “Worldwide Youth in Science and Engineering” and trained two high school students on EEG recording using a wireless device and python programming. This training provided students with the necessary experience to obtain college/university placements, full-time jobs, clinical residency, and internships. The outcomes of this project were published in peer-reviewed conference proceedings and medical journals, and software tools were released as github repositories. PI Varatharajah also received an NSF CAREER award focusing on making EEG-ML decision support tools more robust and trustworthy, which directly builds on the work supported by this award.

 


Last Modified: 01/02/2025
Modified by: Yogatheesan Varatharajah

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