Award Abstract # 2220401
FMitF: Track I: Generative Neural Network Verification in Medical Imaging Analysis

NSF Org: CCF
Division of Computing and Communication Foundations
Recipient: VANDERBILT UNIVERSITY
Initial Amendment Date: July 12, 2022
Latest Amendment Date: July 12, 2022
Award Number: 2220401
Award Instrument: Standard Grant
Program Manager: Sorin Draghici
sdraghic@nsf.gov
 (703)292-2232
CCF
 Division of Computing and Communication Foundations
CSE
 Directorate for Computer and Information Science and Engineering
Start Date: October 1, 2022
End Date: September 30, 2026 (Estimated)
Total Intended Award Amount: $747,533.00
Total Awarded Amount to Date: $747,533.00
Funds Obligated to Date: FY 2022 = $747,533.00
History of Investigator:
  • Taylor Johnson (Principal Investigator)
    taylor.johnson@gmail.com
  • Ipek Oguz (Co-Principal Investigator)
  • Meiyi Ma (Co-Principal Investigator)
Recipient Sponsored Research Office: Vanderbilt University
110 21ST AVE S
NASHVILLE
TN  US  37203-2416
(615)322-2631
Sponsor Congressional District: 05
Primary Place of Performance: Vanderbilt University
PMB 407749 2301 Vanderbilt Place
Nashville
TN  US  37235-0002
Primary Place of Performance
Congressional District:
07
Unique Entity Identifier (UEI): GTNBNWXJ12D5
Parent UEI: K9AHBDTKCB55
NSF Program(s): FMitF: Formal Methods in the F
Primary Program Source: 01002223DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 071Z
Program Element Code(s): 094Y00
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.070

ABSTRACT

Medical images, such as computed tomography (CT) and magnetic resonance imaging (MRI) scans, are routinely transformed and analyzed using computers and software. Medical images are increasingly processed and analyzed with artificial-intelligence and machine-learning methods, such as deep neural networks. In such safety-critical domains, stringent guarantees on the behaviors of these machine-learning methods are essential, but many recent studies have shown risks with these methods, such as lack of robustness and bias. Neural-network formal verification is emerging as an approach to provide guarantees on these machine-learning models to precisely characterize their behaviors. This project's novelties are to develop a neural-network formal-specification and -verification framework for medical-image analysis tasks, apply it to ensure specifications across the medical-image-analysis technology stack, and evaluate it on two specific medical-imaging analysis tasks. The first image-analysis task is the segmentation of brain lesions from MRIs of multiple-sclerosis patients, which is the process of automatically characterizing different regions of the MRIs into corresponding anatomic structures. The second image-analysis task is image synthesis for denoising optical-coherence-tomography (OCT) scans of the retina. The project's impacts are to enable medical-imaging analysis by enhancing confidence in the machine-learning models through formal verification. Beyond the development and application of these formal methods to medical-imaging analysis, the results of this project may enhance trustworthiness in other domains, such as perception and sensing components in autonomous systems.

Most neural-network verification methods developed so far are applicable only to simple computer-vision tasks, such as image classification, whereas medical image analysis typically requires more sophisticated generative computer-vision methods to solve more sophisticated tasks, such as semantic segmentation, instance segmentation, and image synthesis. Developing formal methods for these generative computer-vision tasks in the context of medical-imaging analysis is the core of this project. The first major objective of the project is to develop a robustness-specification framework, building on robustness to adversarial perturbations, specification mining, and metrics from computer vision used for generative tasks. The second major objective is to develop the formal-verification methods, building on reachability analysis of neural networks, specifically developing reachability methods for up-sampling layers used in generative models. The third major objective is to consider the robustness of generative models for image synthesis, such as those trained through generative-adversarial-network (GAN) processes. The fourth major objective is to evaluate these specification and verification methods on the MS lesion segmentation and OCT image-synthesis denoising tasks. The researchers will organize relevant competitions and challenges, such as continuing the Verification of Neural Networks Competition (VNN-COMP) and the IEEE ISBI Longitudinal MS Lesion Segmentation Challenge, and will develop benchmarks for the formal-methods, machine-learning, computer-vision, and medical-imaging-analysis research communities based on the research and results of this project.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 21)
An, Ziyan and Johnson, Taylor T and Ma, Meiyi "Formal Logic Enabled Personalized Federated Learning through Property Inference" Proceedings of the AAAI Conference on Artificial Intelligence , v.38 , 2024 https://doi.org/10.1609/aaai.v38i10.28962 Citation Details
An, Ziyan and Ma, Meiyi "Guiding Federated Learning with Inferenced Formal Logic Properties" Proceedings of the ACM/IEEE 14th International Conference on Cyber-Physical Systems , 2023 https://doi.org/10.1145/3576841.3589633 Citation Details
Brix, Christopher and Müller, Mark Niklas and Bak, Stanley and Johnson, Taylor T. and Liu, Changliu "First three years of the international verification of neural networks competition (VNN-COMP)" International Journal on Software Tools for Technology Transfer , 2023 https://doi.org/10.1007/s10009-023-00703-4 Citation Details
Diego Manzanas Lopez and Sung Woo Choi and Hoang-Dung Tran and Taylor T. Johnson "NNV 2.0: The Neural Network Verification Tool" Computer Aided Verification , 2023 Citation Details
Johnson, Taylor T and Lopez, Diego Manzanas and Tran, Hoang-Dung "Tutorial: Safe, Secure, and Trustworthy Artificial Intelligence (AI) via Formal Verification of Neural Networks and Autonomous Cyber-Physical Systems (CPS) with NNV" , 2024 https://doi.org/10.1109/DSN-S60304.2024.00027 Citation Details
Li, Hao and Liu, Han and Hu, Dewei and Wang, Jiacheng and Oguz, Ipek "Assessing Test-Time Variability for Interactive 3D Medical Image Segmentation with Diverse Point Prompts" , 2024 https://doi.org/10.1109/ISBI56570.2024.10635343 Citation Details
Li, Hao and Liu, Han and Hu, Dewei and Wang, Jiacheng and Oguz, Ipek "Promise: Prompt-Driven 3D Medical Image Segmentation Using Pretrained Image Foundation Models" , 2024 https://doi.org/10.1109/ISBI56570.2024.10635207 Citation Details
Li, Hao and Liu, Han and Hu, Dewei and Yao, Xing and Wang, Jiacheng and Oguz, Ipek "CATS v2: hybrid encoders for robust medical segmentation" , 2024 https://doi.org/10.1117/12.3006820 Citation Details
Liu, Han and Li, Hao and Yao, Xing and Fan, Yubo and Hu, Dewei and Dawant, Benoit and Nath, Vishwesh and Xu, Zhoubing Xu and Oguz, Ipek "COLosSAL: A Benchmark for Cold-Start Active Learning for 3D Medical Image Segmentation" , 2023 Citation Details
Manzanas_Lopez, Diego and Althoff, Matthias and Benet, Luis and Blab, Clemens and Forets, Marcelo and Jia, Yuhao and Johnson, Taylor T and Kranzl, Manuel and Ladner, Tobias and Linauer, Lukas and Neubauer, Philipp and Neubauer, Sophie and Schilling, Chris "ARCH-COMP24 Category Report: Artificial Intelligence and Neural Network Control Systems (AINNCS) for Continuous and Hybrid Systems Plants" , 2024 https://doi.org/10.29007/mxld Citation Details
Neelanjana Pal and Diego Manzanas Lopez and Taylor T Johnson "Robustness Verification of Deep Neural Networks Using Star-Based Reachability Analysis with Variable-Length Time Series Input" Formal Methods for Industrial Critical Systems. FMICS 2023 , 2023 Citation Details
(Showing: 1 - 10 of 21)

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