Award Abstract # 2142898
CAREER:Unraveling the metabolic networks underlying plant stress adaptation

NSF Org: IOS
Division Of Integrative Organismal Systems
Recipient: UNIVERSITY OF FLORIDA
Initial Amendment Date: February 3, 2022
Latest Amendment Date: July 11, 2025
Award Number: 2142898
Award Instrument: Continuing Grant
Program Manager: Kathryn Dickson
kdickson@nsf.gov
 (703)292-7380
IOS
 Division Of Integrative Organismal Systems
BIO
 Directorate for Biological Sciences
Start Date: March 1, 2022
End Date: February 28, 2027 (Estimated)
Total Intended Award Amount: $1,138,854.00
Total Awarded Amount to Date: $930,340.00
Funds Obligated to Date: FY 2022 = $494,117.00
FY 2024 = $436,223.00
History of Investigator:
  • Jeongim Kim (Principal Investigator)
    jkim6@ufl.edu
Recipient Sponsored Research Office: University of Florida
1523 UNION RD RM 207
GAINESVILLE
FL  US  32611-1941
(352)392-3516
Sponsor Congressional District: 03
Primary Place of Performance: University of Florida
FL  US  32611-2002
Primary Place of Performance
Congressional District:
03
Unique Entity Identifier (UEI): NNFQH1JAPEP3
Parent UEI:
NSF Program(s): Physiol Mechs & Biomechanics,
Cross-BIO Activities
Primary Program Source: 010V2122DB R&RA ARP Act DEFC V
01002627DB NSF RESEARCH & RELATED ACTIVIT

01002526DB NSF RESEARCH & RELATED ACTIVIT

01002425DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 1228, 9177, 9178, 1045, 102Z, 9179
Program Element Code(s): 765800, 727500
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

This award is funded in whole or in part under the American Rescue Plan Act of 2021 (Public Law 117- 2).

Plants must constantly deal with adverse environmental changes, which often negatively impacts their growth. For instance, plants with continuously enhanced defense frequently have compromised growth and vice versa. This growth-defense tradeoff is largely due to limited resources, which are used to produce costly defense metabolites. This issue has become more pressing in recent years with ongoing climate change, which accelerates pathogen infection and pest infestation. However, our understanding of how plants simultaneously coordinate defense and growth remains scarce. This proposed research will reveal mechanisms underlying growth regulation governed by a class of stress compounds called aldoximes. Aldoximes are linked to both plant defense - they are precursors of defense compounds and are induced by stresses - and growth - they affect the production of the plant growth hormone auxins as well as phenylpropanoids such as lignin. This project will elucidate how auxins are made from aldoximes and how aldoximes impede phenylpropanoid production in plants. Completion of this project will provide fundamental understanding of plant metabolic networks coordinating hormones, defense compounds, and lignin under stress conditions. The outcome of this project will provide opportunities to enhance levels of phenylpropanoids such as anthocyanins in crops, and will help foster a competitive and successful agriculture workforce. This project also includes a K-12 educational activity called Phyto-Detective, which will develop a series of videos aimed to raise awareness of phytochemicals for a young student audience.

Aldoximes are stress-inducive compounds and are precursors of defense compounds. In addition, they affect plant growth through modulating the production of plant growth hormone auxins and phenylpropanoids. The accumulation of aldoximes represses phenylpropanoid biosynthesis partially through the transcriptional activation of the F-box genes that function in the degradation of phenylalanine ammonia lyase (PAL). Since PAL functions at the entry point of the phenylpropanoid pathway, aldoxime accumulation shuts down the entire phenylpropanoid pathway. Various species produce two major natural auxins, indole-3-acetic acid (IAA) and phenyl acetic acid (PAA), from their respective aldoximes, indicating the significance of aldoxime metabolism in a multitude of different plants. Although the aldoxime-mediated metabolic network plays a crucial role in stress-triggered growth regulation in plants, molecular mechanisms underlying aldoxime-mediated phenylpropanoid repression and aldoxime-derived auxin production remain elusive. This project will elucidate this hidden metabolic network using two model systems, Arabidopsis and tomato. Using omics and genetics approaches, this project will identify the metabolic route of aldoxime-derived auxin production, determine mechanisms of aldoxime-mediated phenylpropanoid repression, and elucidate the roles of aldoxime metabolism in plant stress adaptation. The educational goal is to foster the next generation of the agriculture workforce and increase public awareness of plants and plant-based compounds. The production and dissemination of educational videos for young students through summer undergraduate interns and a K-12 teacher conference, respectively, will provide educational tools to raise awareness of phytochemicals to the public. In addition, graduate students and postdoctoral associates will receive comprehensive research training while participating in this project.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Perez, Veronica C. and Zhao, Haohao and Lin, Makou and Kim, Jeongim "Occurrence, Function, and Biosynthesis of the Natural Auxin Phenylacetic Acid (PAA) in Plants" Plants , v.12 , 2023 https://doi.org/10.3390/plants12020266 Citation Details
Shin, Doosan and Perez, Veronica C. and Dickinson, Gabriella K. and Zhao, Haohao and Dai, Ru and Tomiczek, Breanna and Cho, Keun Ho and Zhu, Ning and Koh, Jin and Grenning, Alexander and Kim, Jeongim "Altered methionine metabolism impacts phenylpropanoid production and plant development in Arabidopsis thaliana" The Plant Journal , v.116 , 2023 https://doi.org/10.1111/tpj.16370 Citation Details
Shin, Doosan and Perez, Veronica C and Kim, Jeongim "Aldoximes: compounds at the crossroads of multiple metabolic pathways in plant" Phytochemistry Reviews , 2024 https://doi.org/10.1007/s11101-024-09950-y Citation Details
Zhao, Haohao and Shin, Doosan and Zhu, Yingfang and Kim, Jeongim "Bridging the Knowledge Gap: Utilization of Mediator Subunits for Crop Improvement" Plant, Cell & Environment , v.48 , 2025 https://doi.org/10.1111/pce.15142 Citation Details
Perez, Veronica C. and Dai, Ru and Tomiczek, Breanna and Mendoza, Jorrel and Wolf, Emily S. A. and Grenning, Alexander and Vermerris, Wilfred and Block, Anna K. and Kim, Jeongim and Gleadow, ed., Ros "Metabolic link between auxin production and specialized metabolites in Sorghum bicolor" Journal of Experimental Botany , 2022 https://doi.org/10.1093/jxb/erac421 Citation Details
Shin, Doosan and Cho, Keun Ho and Tucker, Ethan and Yoo, Chan Yul and Kim, Jeongim "Identification of tomato F-box proteins functioning in phenylpropanoid metabolism" Plant Molecular Biology , v.114 , 2024 https://doi.org/10.1007/s11103-024-01483-4 Citation Details

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