Award Abstract # 2019609
RII Track-2 FEC: Leveraging Big Data to Improve Prediction of Tick-Borne Disease Patterns and Dynamics

NSF Org: OIA
OIA-Office of Integrative Activities
Recipient: REGENTS OF THE UNIVERSITY OF IDAHO
Initial Amendment Date: August 19, 2020
Latest Amendment Date: February 26, 2025
Award Number: 2019609
Award Instrument: Cooperative Agreement
Program Manager: Jeanne Small
jsmall@nsf.gov
 (703)292-8623
OIA
 OIA-Office of Integrative Activities
O/D
 Office Of The Director
Start Date: September 1, 2020
End Date: August 31, 2025 (Estimated)
Total Intended Award Amount: $5,830,709.00
Total Awarded Amount to Date: $6,430,179.00
Funds Obligated to Date: FY 2020 = $2,896,762.00
FY 2021 = $599,470.00

FY 2022 = $1,457,951.00

FY 2023 = $1,475,996.00
History of Investigator:
  • Xiaogang Ma (Principal Investigator)
    xgmachina@gmail.com
  • Frederick Harris (Co-Principal Investigator)
  • Xun Shi (Co-Principal Investigator)
  • Maria Lane (Co-Principal Investigator)
  • Barrie Robison (Co-Principal Investigator)
Recipient Sponsored Research Office: Regents of the University of Idaho
875 PERIMETER DR
MOSCOW
ID  US  83844-9803
(208)885-6651
Sponsor Congressional District: 01
Primary Place of Performance: University of Idaho
875 Perimeter Drive
Moscow
ID  US  83844-9803
Primary Place of Performance
Congressional District:
01
Unique Entity Identifier (UEI): QWYKRJH5NNJ3
Parent UEI:
NSF Program(s): EPSCoR RII: Focused EPSCoR Col,
EPSCoR Research Infrastructure
Primary Program Source: 01002223DB NSF RESEARCH & RELATED ACTIVIT
01002324DB NSF RESEARCH & RELATED ACTIVIT

01002021DB NSF RESEARCH & RELATED ACTIVIT

01002122DB NSF RESEARCH & RELATED ACTIVIT

01002223DB NSF RESEARCH & RELATED ACTIVIT

01002324DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 075Z, 097Z, 102Z, 7217, 7569, 7715, 9150, 9180, EGCH, HPCC, SMET
Program Element Code(s): 194Y00, 721700
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.083

ABSTRACT

Tick-borne diseases (TDs) account for a staggering 94% of human illnesses due to vector-borne diseases in the U.S. The mission of this project is to assimilate disparate datasets with spatio-temporal, environmental and human predictors and to leverage cyberinfrastructure and data science to enhance forecasting of TDs in the western US. The core members of this project are from universities in three EPSCoR jurisdictions: University of Idaho, University of Nevada, Reno, and Dartmouth College (New Hampshire). The collaboration will build capacity across traditional boundaries of research and practice, with an aim to change the way people tackle TDs. Building upon the best practices and standards for open data, the findability and reusability of the assimilated datasets will be improved to enable new analyses and findings. Accordingly, the contributions of this project will have broad and sustained impacts on TD, a public health issue of national importance. With the early-career faculty mentoring activities, this project will increase the pool of academics and practitioners in a collaborative network for improved prediction and informed response to TDs in the western US. The digital games and demos released by the project will help improve the awareness of TDs among the general public. The efforts of this project will also support underserved and largely rural populations at high risk of TDs. All the training programs, including postdoc and graduate student positions, will give priority to women and underrepresented minority groups. Through the national Big Data innovation ecosystem, this project will add a new community of practice via shared deliverables, datasets and complementary knowledge to improve monitoring and forecasting of TDs across US and the world.

This project will contribute to NSF?s big ideas on Harnessing the Data Revolution and Growing Convergence Research through data-intensive research for improved prediction of TDs. The central scientific hypothesis is that, climate change will increase the prevalence of TDs throughout the western US, both through altering the geographic and seasonal distributions of ticks as well as interacting factors of environment, ecology, socioeconomics, and human behavior. The project team will collect and develop application-level datasets, knowledge graphs, tools, and innovative data science methods to advance the understanding of factors, patterns, and risks for TDs in the western US. The research includes three focused scientific objectives: (1) An advanced framework for TD research: Sparse data collection and FAIR framework, workflow provenance, and algorithms for a data life cycle; (2) Identify the changing patterns in tick importation routes, pathogens, and TD dynamics in the West; and (3) Develop spatio-temporal models of tick dynamics that link TDs to climate, environment and socioeconomic factors. The team will incorporate expertise in complementary disciplines to generate enriched open data, promote innovation and capacity in big data analytics, and develop training, education and outreach programs for sustained impact. Through the teamwork, the research will produce fresh understanding of the interacting factors in TD dynamics. Resources and mentoring to support early-career professionals will build towards sustained productivity. We will bring state-of-the-art knowledge and skills to postdocs, students and other practitioners to nurture a new workforce. This collaborative project will engage academic, state, federal and local partners to create a connected and smart network to tackle TDs.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Ma, Xiaogang "Knowledge graph construction and application in geosciences: A review" Computers & Geosciences , v.161 , 2022 https://doi.org/10.1016/j.cageo.2022.105082 Citation Details
McVicar, Molly and Rivera, Isabella and Reyes, Jeremiah B. and Gulia-Nuss, Monika "Ecology of Ixodes pacificus Ticks and Associated Pathogens in the Western United States" Pathogens , v.11 , 2022 https://doi.org/10.3390/pathogens11010089 Citation Details
Nguyen, Hung and Tran, Duc and Galazka, Jonathan M and Costes, Sylvain V and Beheshti, Afshin and Petereit, Juli and Draghici, Sorin and Nguyen, Tin "CPA: a web-based platform for consensus pathway analysis and interactive visualization" Nucleic Acids Research , 2021 https://doi.org/10.1093/nar/gkab421 Citation Details
Nguyen, Hung and Tran, Duc and Tran, Bang and Roy, Monikrishna and Cassell, Adam and Dascalu, Sergiu and Draghici, Sorin and Nguyen, Tin "SMRT: Randomized Data Transformation for Cancer Subtyping and Big Data Analysis" Frontiers in Oncology , v.11 , 2021 https://doi.org/10.3389/fonc.2021.725133 Citation Details
Nguyen, Quang-Huy and Nguyen, Tin and Le, Duc-Hau "DrGA: cancer driver gene analysis in a simpler manner" BMC Bioinformatics , v.23 , 2022 https://doi.org/10.1186/s12859-022-04606-0 Citation Details
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