Award Abstract # 1547580
S2I2: Impl: The Molecular Sciences Software Institute

NSF Org: OAC
Office of Advanced Cyberinfrastructure (OAC)
Recipient: VIRGINIA POLYTECHNIC INSTITUTE & STATE UNIVERSITY
Initial Amendment Date: July 29, 2016
Latest Amendment Date: November 18, 2020
Award Number: 1547580
Award Instrument: Cooperative Agreement
Program Manager: Varun Chandola
OAC
 Office of Advanced Cyberinfrastructure (OAC)
CSE
 Directorate for Computer and Information Science and Engineering
Start Date: August 1, 2016
End Date: July 31, 2022 (Estimated)
Total Intended Award Amount: $19,420,000.00
Total Awarded Amount to Date: $19,420,000.00
Funds Obligated to Date: FY 2016 = $5,880,491.00
FY 2017 = $7,000,000.00

FY 2018 = $1,500,000.00

FY 2019 = $3,539,509.00

FY 2020 = $1,500,000.00
History of Investigator:
  • Thomas Crawford (Principal Investigator)
    crawdad@vt.edu
  • Theresa Windus (Co-Principal Investigator)
  • Vijay Pande (Co-Principal Investigator)
  • Teresa Head-Gordon (Co-Principal Investigator)
  • Shantenu Jha (Co-Principal Investigator)
Recipient Sponsored Research Office: Virginia Polytechnic Institute and State University
300 TURNER ST NW
BLACKSBURG
VA  US  24060-3359
(540)231-5281
Sponsor Congressional District: 09
Primary Place of Performance: Virginia Polytechnic Institute and State University
300 Turner Street NW Suite 4200
Blacksburg
VA  US  24061-0001
Primary Place of Performance
Congressional District:
09
Unique Entity Identifier (UEI): QDE5UHE5XD16
Parent UEI: X6KEFGLHSJX7
NSF Program(s): OFFICE OF MULTIDISCIPLINARY AC,
DMR SHORT TERM SUPPORT,
Software Institutes
Primary Program Source: 01001617DB NSF RESEARCH & RELATED ACTIVIT
01001718DB NSF RESEARCH & RELATED ACTIVIT

01001819DB NSF RESEARCH & RELATED ACTIVIT

01001920DB NSF RESEARCH & RELATED ACTIVIT

01002021DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 096Z, 1711, 7237, 7433, 7504, 7569, 8004, 8211, 8396, 8607, 9216, 9263
Program Element Code(s): 125300, 171200, 800400
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.070

ABSTRACT

The Molecular Sciences Software Institute (MolSSI) will become a focus of scientific research, education and scientific collaboration for the worldwide community of computational molecular scientists. The MolSSI aims to reach these goals by engaging the computational molecular science community in multiple ways to remove barriers between innovations that often occur in small single-researcher groups and the implementation of these ideas in software that is used in the production of science by the entire community. Thus, great ideas will not languish in the "just get the science right" mode, but be incorporated into usable software for the wider community to enable bigger and better molecular science. The MolSSI will catalyze significant advances in software infrastructure, education, standards, and best-practices. These advances are critical because they are needed to address the next set of grand challenges in molecular science. Activities catalyzed by the Institute will improve the interoperability of the software used by the community, make easier the use of this software on the varied and heterogenous computing architectures that currently exist, enable greater scalability of existing and emerging theoretical models, as well as substantially improving the training of molecular-science students in software design and engineering. Through the range of outreach efforts by its multiple institutions, the MolSSI will engage the community to increase the diversity of its workforce by more effectively attracting and retaining students and faculty from underrepresented groups. All of these endeavors will result in fundamentally and dramatically improved molecular science software and its usage, that will reduce or eliminate the current delays - often by years - in the practical realization of theoretical innovations. Ultimately, the Institute will enable computational scientists to more easily navigate future disruptive transitions in computing technology, and most importantly, tackle problems that are orders of magnitude larger and more complex than those currently within their grasp and to realize new, more ambitious scientific objectives. This will accelerate the translation of basic science into new technologies essential to the vitality of the economy and environment, and to compete globally with Europe, Japan, and other countries that are making aggressive investments in advanced cyber-infrastructure.

The MolSSI aims to reach these goals by engaging the computational molecular science community in multiple ways to remove barriers between innovations that often occur in small single- principle investigator groups and the implementation of these ideas in software that is used in the production of science by the entire community. The MolSSI will create a sustainable Molecular Sciences Consortium that will develop use cases and standards for code and data sharing across the software ecosystem and become a focus of scientific research, education and scientific collaboration for the worldwide community of computational molecular scientists. The Institute will create an interdisciplinary team of Software Scientists who will help develop software frameworks, interact with community code developers, collaborate with partners in cyber-infrastructure, form mutually productive coalitions with industry, government labs, and international efforts, and ultimately serve as future experts and leaders. In addition, the Institute will support and mentor a cohort of Software Fellows actively developing code infrastructure in research groups across the U.S., and, in turn, they will engage in MolSSI outreach and education activities within the larger molecular science community. Through a range of multi-institutional outreach efforts, the Institute will engage the community to increase the diversity of its workforce by more effectively attracting and retaining students and faculty from underrepresented groups. The Institute will educate the next generation of software developers by providing workshops, summer schools, on-line forums, and a Professional Master's program in molecular simulation and software engineering. MolSSI will be guided by an internal Board of Directors and an external Science and Software Advisory Board, both comprised of leaders in the field, who will work together with the Software Scientists and Fellows to establish the key software priorities. MolSSI will be sustained by a mix of labor contributed by the community, revenue from education programs and license revenues. In summary, the MolSSI's ultimate impact will be in the translation of basic science into future technological advances essential to the economy, environment, and human health.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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A. Krylov, T. Windus, T. Barnes, E. Marin-Rimoldi, J. Nash, B. Pritchard, D. G. A. Smith, D. Altarawy, P. Saxe, C. Clementi, T. D. Crawford, R. Harrison, S. Jha, V. Pande, and T. Head-Gordon "Computational Chemistry Software and Its Advancement: Three Grand Challenge Cases for Computational Molecular Science" Journal of Chemical Physics , v.149 , 2018 , p.180901 http://dx.doi.org/10.1063/1.5052551
N. Wilkins-Diehr and T. D. Crawford "NSF?s Inaugural Software Institutes: the Science Gateways Community Institute and the Molecular Sciences Software Institute" Computational Science and Engineering , v.20 , 2018 , p.26 http://dx.doi.org/10.1109/MCSE.2018.05329813

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

Computational molecular science, which encompasses the fields of quantum chemistry, computational materials science, and biomolecular simulation, has achieved fantastic success over its long history. Atomistic and coarse-grained models – ranging from classical molecular dynamics to quantum mechanics and the hierarchy of models in between – have provided unprecedented levels of insight into a wide range of chemical, biological, and materials phenomena. Such insights have rightly earned the field its status as "full partner with experiment" in scientific discovery, and today tens of thousands of scientists worldwide make use of the software the molecular sciences community has produced. This success is accompanied by numerous challenges, ranging from technical to social. Impenetrable and aging code stacks, rapidly evolving computing hardware, and inertia in the scientific educational culture have hindered the advance of the field and prevented computational molecular scientists from solving the larger and more complex problems that require our community's deep knowledge and expertise. From the design of new energy and data-storage materials to unraveling the mysteries of intrinsically disordered proteins, improvements in the computational molecular sciences' education, cyberinfrastructure, and software engineering practices promise to yield tremendous scientific advances through modeling and simulation. 

The launch of the Molecular Sciences Software Institute (MolSSI, molssi.org) in 2016 by the NSF was a milestone in the advancement of the computational molecular sciences. Established by leading representatives from across the domain, the MolSSI was designed to serve and enhance the software development efforts of the national and international molecular sciences research effort. Through the deployment of advanced software cyberinfrastructure, community-wide standards for code and data interoperability, and an educational initiative that reaches a large, diverse audience of undergraduate, graduate, and postdoctoral students, the MolSSI has enabled new science and broader impacts and is training the next generation of researchers for fields interconnected at the molecular level.

In its first phase of operation, the MolSSI has endeavored to provide three key services to the community: (1) software expertise and infrastructure, (2) community engagement and leadership, and (3) education and training. The MolSSI?s Software Scientist team has developed extensive, open-source software infrastructure for the molecular sciences community, including the basis set exchange (used by more than 10,000 scientists per month), the QCArchive project with its public database that contains computational results for more than 105 million molecules, and our COVID-19 Molecular Structure and Therapeutics Hub, which has been accessed by more than 15,000 scientists seeking our 75+ ms of simulation data and hundreds of virus models.  The MolSSI's Software Fellowship program has provided financial support and mentoring to more than 100 graduate students and postdocs across the U.S.  The Institute has published 115 peer-reviewed papers since 2018, with more than 4,000 citations and an Institute H-index of 30.  Our Education Initiative has engaged more than 2,000 students in face-to-face instruction through Software Summer Schools, Best Practices Workshops, Software Fellowship bootcamps, undergraduate programming schools, and webinars.  Our educational curricula are now available online and reach approximately 5,000 students per month.  Finally, the MolSSI has organized more than 25 community-led Software Workshops, which have engaged more than 850 participants across the entire molecular sciences domain.

As the MolSSI moves into its second phase, it will leverage its numerous accomplishments thus far to expand further the scientific community's ability to address key scientific challenges that impact national economic, health, social, and environmental priorities, including new energy technologies, fighting COVID-19 and future pandemics, climate change, quantum information sciences, artificial intelligence/machine learning, and the development of a more diverse and resilient workforce.


Last Modified: 11/28/2022
Modified by: Thomas D Crawford

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