Award Abstract # 1513616
III: Medium: Collaborative Research: Topological Data Analysis for Large Network Visualization
NSF Org: |
IIS
Division of Information & Intelligent Systems
|
Recipient: |
UNIVERSITY OF UTAH
|
Initial Amendment Date:
|
August 27, 2015 |
Latest Amendment Date:
|
November 2, 2018 |
Award Number: |
1513616 |
Award Instrument: |
Standard Grant |
Program Manager: |
Hector Munoz-Avila
IIS
Division of Information & Intelligent Systems
CSE
Directorate for Computer and Information Science and Engineering
|
Start Date: |
September 1, 2015 |
End Date: |
August 31, 2020 (Estimated) |
Total Intended Award
Amount: |
$761,067.00 |
Total Awarded Amount to
Date: |
$793,089.00 |
Funds Obligated to Date:
|
FY 2015 = $761,067.00
FY 2016 = $16,302.00
FY 2019 = $15,720.00
|
History of Investigator:
|
-
Bei
Phillips
(Principal Investigator)
beiwang@sci.utah.edu
-
Paul
Rosen
(Co-Principal Investigator)
|
Recipient Sponsored Research
Office: |
University of Utah
201 PRESIDENTS CIR
SALT LAKE CITY
UT
US
84112-9049
(801)581-6903
|
Sponsor Congressional
District: |
01
|
Primary Place of
Performance: |
University of Utah
72 S Central Campus Dr
Salt Lake City
UT
US
84112-9200
|
Primary Place of
Performance Congressional District: |
01
|
Unique Entity Identifier
(UEI): |
LL8GLEVH6MG3
|
Parent UEI: |
|
NSF Program(s): |
Info Integration & Informatics, Algorithmic Foundations
|
Primary Program Source:
|
01001516DB NSF RESEARCH & RELATED ACTIVIT
01001617DB NSF RESEARCH & RELATED ACTIVIT
01001920DB NSF RESEARCH & RELATED ACTIVIT
|
Program Reference
Code(s): |
7364,
7924,
7929,
9150,
9251
|
Program Element Code(s):
|
736400,
779600
|
Award Agency Code: |
4900
|
Fund Agency Code: |
4900
|
Assistance Listing
Number(s): |
47.070
|
ABSTRACT

This project leverages topological methods to develop a new class of data analysis and visualization techniques to understand the structure of networks. Networks are often used in modeling social, biological and technological systems, and capturing relationships among individuals, businesses, and genomic entities. Understanding such large, complex data sources is highly relevant and important in application areas including brain connectomics, epidemiology, law enforcement, public policy and marketing. The proposed research will be evaluated over multiple data sources, including but not limited to large social, communication and brain network datasets. Furthermore, the new approaches developed in this project will be integrated into growing data analysis curricula, shared through developing workshops, and used as topics to continue attracting underrepresented groups into STEM fields and computer science specifically.
The scientific challenges this project addresses are two-fold: how to use topology to extract features from the data; and how to design effective visualizations to communicate these features to domain experts and decision makers. Topological techniques central to this project provide a strong theoretical basis for simplifying and summarizing complex data while still preserving critical underlying structures. They also provide a basis for task-oriented designs that allow us to control the volume of data to be displayed in visualizations, so users can develop faithful mental models of the data, facilitating information discovery. This project focuses on two research agendas. First, it proposes a rich body of topological summarization techniques to extract and preserve important topological features within large-scale graph-structured networks, and to obtain compact and hierarchical representations that are suitable for visual exploration. The feature extracting process captures complex interactions in the system, describes features at all scales, is robust with respect to noise, and has efficient computation. Second, this project proposes designing visualizations that encode the extracted topological structures explicitly, focusing on investigating techniques to fully exploit their properties in the visual metaphors to be developed. The project web site (http://www.sci.utah.edu/networktdav) provides additional information and will include access to developed tools and test data sets.
PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 50)
(Showing: 1 - 50 of 50)
Adam Brown, Bei Wang
"Sheaf-Theoretic Stratification Learning"
34th International Symposium on Computational Geometry (SOCG)
, v.99
, 2018
10.4230/LIPIcs.SoCG.2018.14
Adam Brown, Bei Wang
"Sheaf-Theoretic Stratification Learning From Geometric and Topological Perspectives"
Discrete & Computational Geometry
, 2020
10.1007/s00454-020-00206-y
Adam Brown, Omer Bobrowski, Elizabeth Munch, Bei Wang
"Probabilistic Convergence and Stability of Random Mapper Graphs"
Journal of Applied and Computational Topology
, 2020
10.1007/s41468-020-00063-x
Alejandro Robles, Mustafa Hajij, Paul Rosen
"The Shape of an Image: A Study of Mapper on Images"
13th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications
, 2018
Ashley Suh, Christopher Salgado, Mustafa Hajij, Paul Rosen
"TopoLines: Topological Smoothing for Line Charts"
EG/VGTC Conference on Visualization Short Paper
, 2020
10.2312/evs.20201053
Ashley Suh, Mustafa Hajij, Bei Wang, Carlos Scheidegger, Paul Rosen
"Persistent Homology Guided Force-Directed Graph Layouts"
IEEE Transactions on Visualization and Computer Graphics
, v.26
, 2020
, p.697-707
10.1109/TVCG.2019.2934802
Athawale, Tushar and Maljovec, Dan and Yan, Lin and Johnson, Christopher and Pascucci, Valerio and Wang, Bei
"Uncertainty Visualization of 2D Morse Complex Ensembles Using Statistical Summary Maps"
IEEE Transactions on Visualization and Computer Graphics
, 2020
https://doi.org/10.1109/TVCG.2020.3022359
Citation
Details
Braxton Osting, Sourabh Palande, Bei Wang.
"Towards Spectral Sparsification of Simplicial Complexes Based on Generalized Effective Resistance"
Journal of Computational Geometry
, v.11
, 2020
, p.176-211
1920-180X
Brittany T. Fasy and Bei Wang
"Exploring Persistent Local Homology in Topological Data Analysis"
IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)
, 2016
10.1109/ICASSP.2016.7472915
Catanzaro, Michael J. and Curry, Justin M. and Fasy, Brittany Terese and Lazovskis, Jnis and Malen, Greg and Riess, Hans and Wang, Bei and Zabka, Matthew
"Moduli spaces of morse functions for persistence"
Journal of Applied and Computational Topology
, 2020
10.1007/s41468-020-00055-x
Citation
Details
Corbet, Renรฉ and Fugacci, Ulderico and Kerber, Michael and Landi, Claudia and Wang, Bei
"A kernel for multi-parameter persistent homology"
Computers & Graphics: X
, v.2
, 2019
10.1016/j.cagx.2019.100005
Citation
Details
Eleanor Wong, Sourabh Palande, Bei Wang, Brandon Zielinski, Jeffrey Anderson and P. Thomas Fletcher
"Kernel Partial Least Squares Regression for Relating Functional Brain Network Topology to Clinical Measures of Behavior"
IEEE 13th International Symposium on Biomedical Imaging (ISBI)
, 2016
10.1109/ISBI.2016.7493506
Elizabeth Munch and Bei Wang
"Convergence between Categorical Representations of Reeb Space and Mapper"
32nd International Symposium on Computational Geometry (SOCG)
, 2016
10.4230/LIPIcs.SoCG.2016.53
Ellen Gasparovic, Maria Gommel, Emilie Purvine, Radmila Sazdanovic, Bei Wang, Yusu Wang, Lori Ziegelmeier
"The Relationship Between the Intrinsic Cech and Persistence Distortion Distances for Metric Graphs"
Journal of Computational Geometry
, v.10
, 2019
, p.477-499
10.20382/jocg.v10i1a16
Gasparovic, Ellen and Gommel, Maria and Purvine, Emilie and Sazdanovic, Radmila and Wang, Bei and Wang, Yusu and Ziegelmeier, Lori
"The relationship between the intrinsic Cech and persistence distortion distances for metric graphs"
Journal of computational geometry
, v.10
, 2019
10.20382/jocg.v10i1a16
Citation
Details
Han Han, Konstantinos Oikonomou, Nithin Chalapathi, Masood Parvania, Bei Wang
"Visualizing Interdependent Power-Water Infrastructure Networks: Tasks, Challenges, and Opportunities"
IEEE Power & Energy Society Innovative Smart Grid Technologies Conference (ISGT)
, 2020
10.1109/ISGT45199.2020.9087680
Hoa Nguyen and Paul Rosen
"DSPCP: A Data Scalable Approach for Identifying Relationships in Parallel Coordinates"
IEEE Transactions on Visualization and Computer Graphics (TVCG)
, 2017
10.1109/TVCG.2017.2661309
Hoa Nguyen, Paul Rosen and Bei Wang
"Visual Exploration of Multiway Dependencies in Multivariate Data"
ACM SIGGRAPH ASIA Symposium on Visualization
, 2016
10.1145/3002151.3002162
Jochen Jankowai, Bei Wang, Ingrid Hotz
"Robust Extraction and Simplification of 2D Symmetric Tensor Field Topology"
Computer Graphics Forum (CGF)
, v.38
, 2019
doi.org/10.1111/cgf.13693
Kevin Knudson, Bei Wang
"Discrete Stratified Morse Theory: A User's Guide"
34th International Symposium on Computational Geometry (SOCG)
, v.99
, 2018
10.4230/LIPIcs.SoCG.2018.54
Lan, Fangfei and Palande, Sourabh and Young, Michael and Wang, Bei
"Uncertainty Visualization for Graph Coarsening"
IEEE International Conference on Big Data (Big Data)
, 2022
https://doi.org/10.1109/BigData55660.2022.10021039
Citation
Details
Lin Yan, Yaodong Zhao, Paul Rosen, Carlos Scheidegger, Bei Wang
"Homology-Preserving Dimensionality Reduction via Manifold Landmarking and Tearing"
IEEE Symposium on Visualization in Data Science (VDS)
, 2018
Lin Yan, Yusu Wang, Elizabeth Munch,Ellen Gasparovic, Bei Wang
"A Structural Average of Labeled Merge Trees for Uncertainty Visualization"
IEEE Transactions on Visualization and Computer Graphics
, v.26
, 2020
, p.832-842
10.1109/TVCG.2019.2934242
Michael J. Catanzaro, Justin Curry, Brittany Terese Fasy, Janis Lazovskis, Greg Malen, Hans Riess, Bei Wang, Matthew Zabka
"Moduli Spaces of Morse Functions for Persistence"
Journal of Applied and Computational Topology
, v.4
, 2020
, p.353-385
10.1007/s41468-020-00055-x
Michal Adamaszek, Henry Adams, Ellen Gasparovic, Maria Gommel, Emilie Purvine, Radmila Sazdanovic, Bei Wang, Yusu Wang, Lori Ziegelmeier
"Vietoris-Rips and Cech Complexes of Metric Gluings"
34th International Symposium on Computational Geometry (SOCG)
, v.99
, 2018
10.4230/LIPIcs.SoCG.2018.3
Michal Adamaszek, Henry Adams, Ellen Gasparovic, Maria Gommel, Emilie Purvine, Radmila Sazdanovic, Bei Wang, Yusu Wang, Lori Ziegelmeier.
"On Homotopy Types of Vietoris-Rips Complexes of Metric Gluings"
Journal of Applied and Computational Topology
, v.4
, 2020
, p.425-454
10.1007/s41468-020-00054-y
Mustafa Hajij, Basem Assiri, Paul Rosen
"Parallel Mapper"
Proceedings of the Future Technologies Conference
, 2020
, p.717-731
10.1007/978-3-030-63089-8_47
Mustafa Hajij, Bei Wang, Carlos Scheidegger, Paul Rosen
"Visual Detection of Structural Changes in Time-Varying Graphs Using Persistent Homology"
IEEE Pacific Visualization Symposium (PacificVis)
, 2018
10.1109/PacificVis.2018.00024
Mustafa Hajij, Paul Rosen
"An Efficient Data Retrieval Parallel Reeb Graph Algorithm"
MDPI Algorithms
, v.13
, 2020
, p.258
10.3390/a13100258
Paul Rosen, Ashley Suh, Christopher Salgado, Mustafa Hajij
"TopoLines: Topological Smoothing for Line Charts"
Eurographics Conference on Visualization (EuroVis) Short Papers
, 2020
10.2312/evs.20201053
Paul Rosen, Junyi Tu and Les Piegl
"A Hybrid Solution to Calculating Augmented Join Trees of 2D Scalar Fields in Parallel"
CAD Conference and Exhibition
, 2017
, p.32-36
10.14733/cadconfP.2017.32-36
Paul Rosen, Mustafa Hajij, Junyi Tu, Tanvirul Arafin, Les Piegl
"Using Topological Data Analysis to Infer the Quality in Point Cloud-based 3D Printed Objects"
Computer-Aided Design & Applications
, v.16
, 2019
10.14733/cadaps.2019.519-527
Primoz Skraba, Paul Rosen, Bei Wang, Guoning Chen, Harsh Bhatia and Valerio Pascucci.
"Critical Point Cancellation in 3D Vector Fields: Robustness and Discussion."
IEEE Transactions on Visualization and Computer Graphics (TVCG)
, v.22
, 2016
, p.1683-1693
10.1109/TVCG.2016.2534538
Rathore, Archit and Chalapathi, Nithin and Palande, Sourabh and Wang, Bei
"TopoAct: Visually Exploring the Shape of Activations in Deep Learning"
Computer Graphics Forum
, v.40
, 2021
https://doi.org/10.1111/cgf.14195
Citation
Details
Rene Corbet, Ulderico Fugacci, Michael Kerber, Claudia Landi, Bei Wang
"A Kernel for Multi-Parameter Persistent Homology"
Computers & Graphics: X
, v.2
, 2019
doi.org/10.1016/j.cagx.2019.100005
Shusen Liu, Dan Maljovec, Bei Wang, Peer-Timo Bremer and Valerio Pascucci
"Visualizing High-Dimensional Data: Advances in the Past Decade"
IEEE Transactions on Visualization and Computer Graphics (TVCG)
, v.23
, 2017
, p.1249-1268
10.1109/TVCG.2016.2640960
Shusen Liu, Peer-Timo Bremer, Jayaraman J. Thiagarajan, Bei Wang, Brian Summa and Valerio Pascucci
"Grassmannian Atlas: A General Framework for Exploring Linear Projections of High-Dimensional Data"
Computer Graphics Forum (CGF)
, v.35
, 2016
, p.1-10
10.1111/cgf.12876
Shusen Liu, Peer-Timo Bremer, Jayaraman J. Thiagarajan, Vivek Srikumar, Bei Wang, Yarden Livnat and Valerio Pascucci
"Visual Exploration of Semantic Relationships in Neural Word Embeddings"
IEEE Transactions on Visualization and Computer Graphics
, v.24
, 2018
, p.553-562
10.1109/TVCG.2017.2745141
Sourabh Palande, Vipin Jose, Brandon Zielinski, Jeffrey Anderson, P. Thomas Fletcher and Bei Wang
"Revisiting Abnormalities in Brain Network Architecture Underlying Autism Using Topology-Inspired Statistical Inference"
International Workshop on Connectomics in NeuroImaging (CNI)at the 20th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
, 2017
10.1007/978-3-319-67
Sourabh Palande, Vipin Jose, Brandon Zielinski, Jeffrey Anderson, P. Thomas Fletcher, Bei Wang
"Revisiting Abnormalities in Brain Network Architecture Underlying Autism Using Topology-Inspired Statistical Inference"
Brain Connectivity
, v.9
, 2019
10.1089/brain.2018.0604
Suh, Ashley and Hajij, Mustafa and Wang, Bei and Scheidegger, Carlos and Rosen, Paul
"Persistent Homology Guided Force-Directed Graph Layouts"
IEEE Transactions on Visualization and Computer Graphics
, v.26
, 2020
10.1109/TVCG.2019.2934802
Citation
Details
Tim Sodergren, Jessica Hair, Jeff M. Phillips, Bei Wang
"Visualizing Sensor Network Coverage with Location Uncertainty"
Symposium on Visualization in Data Science (VDS) at IEEE VIS
, 2017
Tushar Athawale, Dan Maljovec, Lin Yan, Chris R. Johnson, Valerio Pascucci, Bei Wang
"Uncertainty Visualization of 2D Morse Complex Ensembles Using Statistical Summary Maps"
IEEE Transactions on Visualization and Computer Graphics
, 2020
10.1109/TVCG.2020.3022359
Wang, Yuan and Wang, Bei
"Topological inference of manifolds with boundary"
Computational Geometry
, v.88
, 2020
10.1016/j.comgeo.2019.101606
Citation
Details
Wathsala Widanagamaachchi, Alexander Jacques, Bei Wang, Erik Crosman, Peer-Timo Bremer, Valerio Pascucci and John Horel
"Exploring the Evolution of Pressure-Perturbations to Understand Atmospheric Phenomena"
IEEE Pacific Visualization Symposium (PacificVis)
, 2017
Yan, Lin and Wang, Yusu and Munch, Elizabeth and Gasparovic, Ellen and Wang, Bei
"A Structural Average of Labeled Merge Trees for Uncertainty Visualization"
IEEE Transactions on Visualization and Computer Graphics
, v.26
, 2020
10.1109/TVCG.2019.2934242
Citation
Details
Youjia Zhou, Kevin Knudson, Bei Wang
"Visual Demo of Discrete Stratified Morse Theory (Media Exposition)"
International Symposium on Computational Geometry (SoCG) Media Exposition
, 2020
10.4230/LIPIcs.SoCG.2020.82
Yuan Wang, Bei Wang
"Topological Inference of Manifolds with Boundary"
Computational Geometry: Theory and Applications
, v.88
, 2020
10.1016/j.comgeo.2019.101606
Zhe Wang, Nivan Ferreira, Youhao Wei, Aarthy Sankari Bhaskar, Carlos Scheidegger
"Gaussian Cubes: Real-Time Modeling for Visual Exploration of Large Multidimensional Datasets"
IEEE Transactions on Visualization and Computer Graphics (TVCG)
, v.23
, 2017
, p.681-690
10.1109/TVCG.2016.2598694
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(Showing: 1 - 50 of 50)
PROJECT OUTCOMES REPORT

Disclaimer
This Project Outcomes Report for the General Public is displayed verbatim as submitted by the
Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or
recommendations expressed in this Report are those of the PI and do not necessarily reflect the
views of the National Science Foundation; NSF has not approved or endorsed its content.
Networks are often used to model social, biological and technological systems. The challenges in visualizing large networks are two-fold: how to perform effective analysis that extract features from the complex network data; and how to design effective visualizations to communicate these features to the users. This project has addressed these challenges by leveraging topological data analysis to develop visualizations for large network data. In particular, this project has introduced a rich body of topological summarization techniques to simplify large-scale networks into compact representations, and provided interactive visualizations for users exploring such data. This project has built new tools for the analysis and visualization of network data by linking their topological profiles with interactive visualization. The contributions include using persistent homology to guide force-directed graph layouts, constructing topological summary graphs to explore activations from neural networks, visualizing infrastructure networks such as interdependent electric bus transit and power distribution systems for smart cities, and efficient computation of topological descriptors. This project has broadened the applications of topological data analysis in network visualization. The results of the project have been disseminated to multiple research communities via publications and presentations, in Mathematics, Computer Science, Neuroscience, Electrical and Computer Engineering, and Biochemistry. In total, the project has produced 2 best papers, 14 journal publications, 17 conference publications, 2 book chapters, and 6 software tools. All software tools are open source and publicly available, including an interactive tool for the automated exploration and contextualization of metabolic networks, and a tool that implements persistent homology guided force-directed graph layout. The project has also created training opportunities for a number of students, including students from underrepresented groups. It has also led to two Dagstuhl Seminars titled "Topology, Computation and Data Analysis" that facilitate interactions among data theorists and data practitioners from several communities to address challenges in computational topology, topological data analysis, and topological visualization. Two undergraduate students have won prestigious awards, an Honorable Mention and a Finalist among the Computing Research Association (CRA) Outstanding Undergraduate Researchers, respectively.
Last Modified: 01/05/2021
Modified by: Bei W Phillips
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