(Showing: 1 - 10 of 261)
(Showing: 1 - 261 of 261)
A. Angelucci, M. Bijanzadeh, L. Nurminen, F. Federer, S. Merlin and P. C. Bressloff
"Circuits and mechanisms for surround modulation in visual cortex"
Ann. Rev. Neurosci.
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A.A. Onasoga, K. Leiderman, A. L. Fogelson, M. Wang, M.U. Manco-Johnson, J.A. DiPaola, K.B. Neeves
"The Effect of Factor VIII Deficiencies and Replacement and Bypass Therapies on Thrombus Formation under Venous Flow Conditions in Microfluidic and Computational Models"
PLOS One
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10.1371/journal.pone.0078732
Aaron L. Fogelson, James P. Keener
"A Framework for Exploring the Post-gelation Behavior of Ziff and Stell's Polymerization Models"
SIAM Journal on Applied Mathematics
, 2014
Aaron L. Fogelson, James P. Keener
"A Framework for Exploring the Post-gelation Behavior of Ziff and Stell's Polymerization Models."
SIAM Journal on Applied Mathematics
, v.75
, 2015
, p.1346
Aaron L. Fogelson, Keith B. Neeves
"Fluid Mechanics of Blood Clotting"
Annual Review of Fluid Mechanics
, v.47
, 2015
, p.377
AB Beams, DJA Toth, K Khader, FR Adler
"Harnessing Intra-Host Strain Competition to Limit Antibiotic Resistance: Mathematical Model Results"
Bulletin of Mathematical Biology
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, 2016
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A. C. Nelson, A. L. Fogelson, and J. P. Keener,
"A kinetic model of two monomer polymerization"
Physical Review E
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10.1103/PhysRevE.101.022501
Adler FR, Kim PS.
"Models of contrasting strategies of rhinovirus immune manipulation"
Journal of Theoretical Biology
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10.1016/j.jtbi.2013.02.010
A. K. Miller, K. Munger, and F. R. Adler
"A Mathematical Model of Cell Cycle Dysregulation Due to HumanPapillomavirus Infection"
Bull. Math. Biol.
, 2017
Akshay Moharir, Lincoln Gay, Daniel Appadurai, James Keener and Markus Babst
"Eisosomes are Metabolically Regulated Storage Compartments for APC-type Nutrient Transporters"
Mol Biol Cell.
, v.29
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A. M. Granchelli, F. R. Adler, R. H. Keogh, C. Kartsonaki, D. R. Cox, and T. G. Liou
"Microbial interactions in the cystic fibrosis airway"
Journal of Clinical Microbiology
, 2018
A. T. Tredennick, P. B. Adler, and F. R. Adler
"The relationship between species richness and ecosystem variability is shaped by the mechanism of coexistence"
Ecol. Lett.
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Bannish BE, Keener JP, Fogelson AL.
"Modelling fibrinolysis: a 3-D stochastic multiscale model"
Mathematical Medicine and Biology, 2013
, v.31
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10.1093/imammb/dqs029
Bannish BE, Keener JP, Woodbury M, Weisel JW, Fogelson AL
"Modelling fibrinolysis: 1-D continuum models"
Mathematical Medicine and Biology, 2013
, v.31
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, p.45-64
10.1093/imammb/dqs030
B. E. Bannish, I. N. Chernysh, J. P. Keener, A. L. Fogelson, and J. W. Weisel,
"Molecular and Physical Mechanisms ofFibrinolysis and Thrombolysis from MathematicalModeling and Experiments"
Scientific Reports
, v.77
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10.1038/s41598-017-06383-w
B. E. Bannish, I. N. Chernysh, J. P. Keener, A. L. Fogelson, and J. W. Weisel
"Molecular and Physical Mechanisms of Fibrinolysis and Thrombolysis from Mathematical Modeling and Experiments"
Sci Rep
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B. E. Bannish, J. P. Keener, and A. L. Fogelson,
"Modelling Fibrinolysis: A 3-Dimensional Stochastic Multiscale Model"
MMB
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B. E. Bannish, J. P. Keener, M. Woodbury, J. Weisel and A. L. Fogelson
"Modelling Fibrinolysis: Limitations of 1-D Continuum Reaction Diffusion Models"
MMB
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Ben Fogelson and J. P. Keener
"Transport facilitated by rapid binding to elastic tethers"
SIAM J. Appl.Math.
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10.1137/18M1211167
Bewick, K. L Stuble, J.-P. Lessard, R. R. Dunn, F. R. Adler, and N. J. Sanders
"Predicting future coexistence in a North American ant community."
Ecology and Evolution
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B. Fogelson and A. Mogilner
"Actin-myosin force generation and symmetry breaking in the model stress fiber"
SIAM Journal on Applied Mathematics
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10.1137/17M1112261
B. Fogelson and J. P. Keener
"Enhanced nucleocytoplasmic transport due tocompetition for elastic binding sites"
Biophysical J.
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10.1016/j.bpj.2018.05.034
B. Fogelson and J. P. Keener,
"Enhanced nucleocytoplasmic transport due tocompetition for elastic binding sites"
Biophys J.
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Bin Xu and P. C. Bressloff
"A theory of synchrony for active compartments with delays coupled through bulk diffusion"
Physica D
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Bin Xu and P. C. Bressloff
"Model of growth cone membrane polarization via microtubule length regulation."
Biophys. J.
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Bin Xu and P. C. Bressloff.
"A theory of synchrony for active compartments with delays coupled through bulk diffusion"
Physica D
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B. Karamched and P. C. Bressloff
"A delayed feedback model of axonal length sensing."
Biophys. J.
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B. Karamched and P. C. Bressloff
"Effects of geometry on reversible vesicular transport"
J. Phys.
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B. Karamched and P. C. Bressloff
"Effects of geometry on reversible vesicular transport"
J. Phys. A.
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B.L. Walton, M. Lehmann, T. Skorczewski, J.D. Beckman, L.A. Holle, J.A. Cribb, M.J. Mooberry, A.R. Wufsus, B.C. Cooley, J.W. Homeister, M.R. Falvo, A.L. Fogelson, A.S. Wolberg
"Elevated hematocrit promotes arterial thrombosis"
Blood
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Brittney E. Bannish, James P. Keener, and Aaron L. Fogelson
"Modeling Fibrinolysis: A 3-Dimensional Stochastic Multiscale Model"
Mathe-matical Medicine and Biology
, v.31
, 2014
, p.17
10.1093/imammb/dqs029
Brittney E. Bannish, James P. Keener, Michael Woodbury, John W.Weisel, and Aaron L. Fogelson
"Modeling Fibrinolysis: 1-DimensionalContinuum Models"
Mathematical Medicine and Biology
, v.31
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, p.45
10.1093/imammb/dqs030
B. Shtylla and J. P. Keener
"Mathematical modeling of bacterial track-altering motors: track cleaving through burnt-bridge ratchets"
Phys. Rev. E
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B. Shtylla and J. P. Keener
"Mathematical modeling of bacterial track-altering motors:track cleaving through burnt-bridge ratchets"
Phys. Rev. E
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B. Xu and P. C. Bressloff
"PDE-DDE model of cell polarization in fission yeast"
SIAM J. Appl. Math.
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C. Bressloff and S. D. Lawley
"Stochastically-gated diffusion-limited reactions for a small target in a bounded domain."
Phys. Rev. E
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C. E. Miles and J. P. Keener
"Bidirectionality From Cargo Thermal Fluctuations in Motor-Mediated Transport"
J. Theoretical Biology
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C. E. Miles and J. P. Keener
"Jump Locations of Jump-Diffusion Processes with State Dependent Rates"
Journal of Physics A: Mathematical and Theoretical
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10.1088/1751-8121/aa8a90
C. E. Miles and J. P. Keener
"Jump Locations of Jump-Diffusion Processes with State Dependent Rates"
Journal of Physics A: Mathematical and Theoretical
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C. E. Miles, S. D. Lawley and J. P. Keener
"Analysis of non-processive molecular motor transport using renewal reward theory"
SIAM J. Appl. Math.
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C. E. Miles, S. D. Lawley and J. P. Keener
"Analysis of non-processive molecular motor transport using renewal reward theory,"
SIAM J. APPL. Math.
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10.1137/17M1156824
CE Miles, SD Lawley & JP Keener
"Analysis of non-processive molecular motor transport using renewal reward theory"
SIAM Journal on Applied Mathematics
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Childs, P.; Keener, J.P.
"Slow Manifold Reduction of a Stochastic Chemical Reaction: Exploring Keize's Paradox"
Discrete Continuous Dynamical Systems-B
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C. H. Remien, F. R. Adler, L. A. Chesson, L. O. Valenzuela, J. R. Ehleringer, and T. E. Cerling
"Deconvolution of isotope signals from bundles of multiplehairs."
Oecologia
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C. J. Tanner, F. R. Adler, N. B. Grimm, P. M. Groffman, S. A. Levin, J. Munshi-South, D. E. Pataki, M. Pavao-Zuckerman, and W. G. Wilson
"Urban ecology: advancing science and society"
Frontiers in Ecology and the Environment
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Colin D. Eichinger, Aaron L. Fogelson, Vladimir Hlady
"Functional assay of anti platelet drugs based on margination of platelets in flowing blood."
{\it Biointerphases}
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Davis CL, Adler FR.
"Mathematical models of memory CD8+ T-cell repertoire dynamics in response to viral infections"
Bulletin of Mathematical Biology
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10.1007/s11538-013-9817-6
DD Smith, JS Sperry, FR Adler
"Convergence in leaf size versus twig leaf area scaling: do plantsoptimize leaf area partitioning?"
Annals of Botany,
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D. Zavitz, I.A.Youngstrom, A. Borisyuk, M. Wachowiak,
"Effect of interglomerular inhibitory networks on olfactory bulb odor representations"
J. Neuroscience
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10.1523/JNEUROSCI.0233-20.2020
E. J. Graham and F. R. Adler
"Long-term models of oxidative stress and mitochondrial damage in insulin resistance progression"
Journal of Theoretical Biology
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E. J. Graham and F. R. Adler
"Long-term models of oxidative stress and mitochondrial damage in insulin resistance progression"
Journal of Theoretical Biology
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10.1016/j.jtbi.2013.09.028
E. Levien and P. C. Bressloff
"Robustness of stochastic chemical reaction networks to extrinsic noise: the role of deficiency."
SIAM J. Multiscale Model. Simul.
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10.1137/17M1146609
E. Levien and P. C. Bressloff
"Effects of a common noisy environment on correlations in downstream gene transcription"
Bull Math Biol
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E. Levien and P. C. Bressloff
"A stochastic hybrid framework for obtaining statistics of many random walkers in a switching environment"
Multiscale Model. Simul.
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E. Levien and P. C. Bressloff
"A stochastic hybrid framework for obtaining statistics of many random walkers in a switching environment."
Multiscale Model. Simul.
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E. Levien and P. C. Bressloff
"Coupling sample paths to the partial thermodynamic limit in stochastic chemical reaction networks"
J. Comput. Phys.
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E. Levien and P. C. Bressloff
"Effects of a common noisy environment on correlations in downstream gene transcription"
Bull Math Biol.
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E. Levien and P. C. Bressloff
"On balance relations for irreversible chemical reaction networks"
J. Phys. A.
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E. Levien and P. C. Bressloff
"Quasi-steady-state analysis of flashing ratchets."
Phys. Rev.
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E. Levien and P. C. Bressloff
"Robustness of stochastic chemical reaction networks to extrinsic noise: the role of deficiency"
Multiscale Model. Simul.
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Fogelson, Aaron L.; Hussain, Yasmeen H.; Leiderman, Karin
"Blood Clot Formation under Flow: The Importance of Factor XI Depends Strongly on Platelet Count"
BIOPHYSICAL JOURNAL
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F. R. Adler, C. Stockmann, K. Ampofo, A. T. Pavia, and C. L. Byington
"Transmission of rhinovirus in the Utah BIG-LoVE families: Consequences of age and household structure"
PLoS One
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F. R. Adler, S. Quinonez, N. Plowes, and E. S. Adams
"A mechanistic model of ant battles and its consequences for territory scaling"
American Naturalist
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G. Fan and P. C. Bressloff
"Modeling the role of feedback in the adaptive response of bacterial quorum sensing"
Bull. Math. Biol.
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G. Fan and P. C. Bressloff
"Population model of quorum sensing with multiple pathways"
Bull. Math. Biol.
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G. Fan, G. Russo and P. C. Bressloff
"Node-to-Node and Node-to-Medium Synchronization in Quorum Sensing Networks Affected by State-Dependent Noise"
SIAM J. Appl. Dyn. Syst.
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10.1137/19M1249515
G. Fan, P. C. Bressloff
"Modeling the Role of Feedback in the Adaptive Response of Bacterial Quorum Sensing"
Bulletin of Mathematical Biology
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10.1007/s11538-019-00570-8
G. Fan, P. C. Bressloff
"Population model of quorum sensing with multiple parallel pathways"
Bulletin of Mathematical Biology
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10.1007/s11538-017-0343-9
G. Handy, M. Taheri, J.A. White, A. Borisyuk
"Mathematical investigation of IP3-dependent calcium dynamics in astrocytes"
J Comput Neurosci.
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G Handy, SD Lawley & A Borisyuk
"Receptor recharge time drastically reduces the number of captured particles"
PLoS Computational Biology
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G Handy, SD Lawley & A Borisyuk
"Role of trap recharge time on the statistics of captured particles"
Physical Review E.
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G Handy, SD Lawley, A Borisyuk
"Receptor recharge time drastically reduces the number of captured particles"
PLoS Computational Biology
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10.1371/journal.pcbi.1006015
G. Handy, S.D. Lawley, A. Borisyuk
"Role of trap recharge time on the statistics of captured particles"
Physical Review E
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10.1103/PhysRevE.99.022420
G. Handy, S.D. Lawley, A. Borisyuk
"Role of trap recharge time on the statistics of captured particles"
Physical Review E
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G. T. Lyozin, P. C. Bressloff , A. Kumar, Y. Kosaka, H. J. Yost, M. R. Kuehn, and L. Brunelli
"Isolation of rare recombinants without using selectable markers for one-step seamless BAC muta- genesis"
Nature Methods
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H. A. Brooks and P. C. Bressloff
"A mechanism for Turing pattern formation with active and passive transport."
SIAM J. Appl. Dyn. Syst.
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H. A. Brooks and P. C. Bressloff
"Quasicycles in the stochastic hybrid Morris-Lecar neural model"
Phys. Rev. E.
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H. A. Brooks and P. C. Bressloff.
"Turing mechanism for homeostatic control of synaptic density in C elegans"
Phys Rev. E
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Handy, G., Taheri, M., White, J.A., and Borisyuk, A.
"Mathematical investigation of IP3-dependent calcium dynamics in astrocytes."
J. Comput. Neurosci.
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Handy, S.D. Lawley, A. Borisyuk
"Receptor recharge time drastically reduces the number of captured particles"
PLOS Computational Biology
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https://doi.org/10.1371/journal.pcbi.1006015
Herlin, Jacob L.; Nelson, Anna; Scheepers, Marion
"Using ciliate operations to construct chromosome phylogenies"
Involve - A Journal of Mathematics
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H. Kim and P. C. Bressloff
"Mathematical models of cytoneme-based morphogen gradient formation"
SIAM J. Appl. Math
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JB Madrid, SD Lawley
"Competition between slow and fast regimes for extreme first passage times of diffusion"
Journal of Physics A: Mathematical and Theoretical,
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10.1088/1751-8121/ab96ed
Jian Du, Robert D. Guy, Aaron L. Fogelson
"An Immersed Boundary Method for Two-fluid Mixtures"
Journal of Computational Physics
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10.1016/j.jcp.2014.01.008
Jian Du, Robert D. Guy, Aaron L. Fogelson, Grady B. Wright, and James P. Keener
"An Interface-capturing Regularization Method for Solvingthe Equations for Two-fluid Mixtures"
Communications in Computational Physics
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10.4208/cicp.180512.210313a
J. J. Horns, F. R. Adler, and C. H. Sekercioglu
"Using opportunistic citizen science data to estimate avian population trends"
Biological Conservation
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J. Kubinak, D. Cornwall, F. R. Adler, and W. K. Potts,
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Proc. Roy. Soc.
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J. Lee, F. R. Adler, and P. S. Kim
"A mathematical model for the macrophage response to respiratory viral infection in normal and asthmatic conditions"
Bull. Math. Biol.
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J. Ma and J. P. Keener
"Computation of Biomarkers in Pharmacokinetics with the Aid of Singular Perturbation Methods"
Journal of Mathematical Biology
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J. Ma and J. P. Keener
"The computation of biomarkers in pharmacokinetics with the aid of singular perturbation methods"
Journal of Mathematical Biology
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10.1007/s00285-018-1257-3
J. M. Newby, P. C. Bressloff and J. P. Keeener
"The effect of Potassium channels on spontaneous action potential initiation by stochastic ion channels"
Phys. Rev. Lett.
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Joyce Lin and J. P. Keener
"Microdomain effects in transverse cardiac propagation"
Biophys. J.
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J. P. Keener and B. Shtylla
"A mathematical model of force generation by flexible kinetochore-microtubule attachments"
Biophysical Journal
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K. A. Brown, N. Daneman, M. Jones, K. Nechodom, V. Stevens, F. R. Adler, M. B. Goetz, J. Mayer, and M. Samore
"The drivers of acute and long-term care Clostridium difficile infection rates: Aretrospective multilevel cohort study of 251 facilities"
Clinical Infectious Diseases
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Karin Leiderman, Aaron L. Fogelson
"An Overview of Mathematical Modeling of Thrombus Formation Under Flow"
Thrombosis Research
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Karin Leiderman, William Chang, Mikhail Ovanesov, Aaron L. Fogelson
"Synergy Between Tissue Factor and Exogenous Factor XIa in Initiating Coagulation."
Arterioschlerosis, Thrombosis, and Vascular Biology
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Kathryn G Link, Michael T Stobb, Jorge A Di Poala, Keith B Neeves, Aaron L Fogelson, Suzanne S Sindi, Karin Leiderman
"A local and global sensitivity analysis of a mathematical model of coagulation and platelet deposition under flow"
PLoS One
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https://doi.org/10.1371/journal.pone.0200917
Kathryn G Link, Michael T Stobb, Jorge A Di Poala, Keith B Neeves,Aaron L Fogelson Suzanne S Sindi, Karin Leiderman
"A local andglobal sensitivity analysis of a mathematical model of coagulation andplatelet deposition under flow"
PLoS One
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10.1371/journal.pone.0200917
Kathryn G. Link, Michael T. Stobb, Matthew G. Sorrells, Maria Bortot, Katherine Ruegg, Marilyn J. Manco-Johnson, Jorge A. Di Paola,Suzanne S. Sindi, Aaron L. Fogelson, Karin Leiderman, Keith B. Neeves
"A mathematical model of coagulation under flow identifies factor V as a modifier of thrombin generation in hemophilia A"
Journal of Thrombosis and Hemostasis
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10.1111/jth.14653
Kathryn G. Link, Michael T. Stobb, Matthew G. Sorrells, Maria BortotKatherine Ruegg, Marilyn J. Manco-Johnson, Jorge A. Di Paola, SuzanneS. Sindi, Aaron L. Fogelson, Karin Leiderman, Keith B. Neeves
"Amathematical model of coagulation under flow identifies factor V as amodifier of thrombin generation in hemophilia A"
Journal of Thrombosisand Hemostasis
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10.1111/jth.14653
Kees McGahan and J. P. Keener
"A mathematical model analyzing temperature threshold dependence in cold sensitive neurons"
PLOS One
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10.1371/journal.pone.0237347
Kiersten Utsey and J. P. Keener
"A mathematical model for inheritance of DNA methylation patterns in somatic cells"
Bulletin of Mathematical Biology
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10.1007/s11538-020-00765-4
Koop, J. and Kim, P. and Knutie, S. and Adler, F. and Clayton, D.
"Introduced parasitic fly may lead to local extinction of Darwin's finchpopulations."
Journal of Applied Ecology
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Leiderman, Karin M.; Fogelson, Aaron. L.
"The Influence of Hindered Transport on the Development of Platelet Thrombi Under Flow"
Bulletin of Mathematical Biology, 2013
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Liou, Theodore G and Adler, Frederick R and Argel, Natalia and Asfour, Fadi and Brown, Perry S and Chatfield, Barbara A and Daines, Cori L and Durham, Dixie and Francis, Jessica A and Glover, Barbara and others
"Prospective multicenter randomized patient recruitment and sample collection to enable future measurements of sputum biomarkers of inflammation in an observational study of cystic fibrosis"
BMC medical research methodology
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L. Zinn-Bjorkman and F. R. Adler
"Modeling factors that regulate cell cooperatively in the zebras posterior lateral line primordium"
J. Theor. Biol.
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L. Zinn-Bjorkman and F. R. Adler
"Modeling factors that regulate cell cooperativity in the zebrafish posterior lateral line primordium"
J. Theor. Biol.
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10.1016/j.jtbi.2018.02.009
M. Chugunova, M. Doyle, J. Keener and R. Taranets
"Use of mathematical modeling to study pressure regimes in normal and Fontan blood flow circulations"
Mathematics-in-Industry Case Studies
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Miguel A. Dumett and J. P. Keener
"The Pyrite Iron Cycle Catalyzed by \textit{Acidithiobacillus Ferroxidans"
J Math. Biol.
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Miller A.K., Munger K, Adler F.R.
"A Mathematical Model of Cell Cycle Dysregulation Due to Human Papillomavirus Infection"
Bull Math Biol.
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Moore, J. R. and Adler, F. R.
"A mathematical model of T1D acceleration and delay by viral infection."
Bulletin of Mathematical Biology
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M. Taheri, G. Handy, A. Borisyuk, J.A. White
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Front. Syst. Neurosci.
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Newby JM, Bressloff PC, Keener JP.
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Pays. Rev. Lett.
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N. Lewis-Rogers, J. Seger, and F. R. Adler,
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J. Virol.
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N Lewis-Rogers, J Seger, FR Adler
"Human rhinovirus diversity and evolution: How strange the change fromMajor to minor"
Journal of Virology
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Olaolu Osunbayoa, Christopher Miles, Babu JN Reddy, James P. Keener, and MichaelD. Vershinin
"Complex nearly immotile behavior of enzymatically driven cargos"
Soft Matter
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O. L. Lewis and R. D. Guy
"Analysis of peristaltic waves and their role in migrating Physarum plasmodia"
Journal of Physics D: Applied Physics
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O. L. Lewis, J. P. Keener, and A. L. Fogelson
"A physics-based model for maintenance of the pH gradient in the gastric mucus layer"
American Journal of Physiology-Gastrointestinal and Liver Physiology
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O. L. Lewis, J. P. Keener, and A. L. Fogelson
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American Journal of Physiology-Gastrointestinal and Liver Physiology
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O. L. Lewis, J. P. Keener, and A. L. Fogelson
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Gels
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O. L. Lewis, J. P. Keener, and A. L. Fogelson
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Gels
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10.3390/gels4030076
Ondrej Maxian, Andrew Kassen, Wanda Strychalski
"A continuousenergy-based immersed boundary method for elastic shells."
Journal of Computational Physics
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10.1016/j.jcp.2018.05.045
O. Osunbayoa, C. E. Miles, F. Doval, B. J. N. Reddy, J. P. Keener, and M. D. Vershinin
"Complex nearly immotile behavior of enzymatically driven cargos"
Soft Matter
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Owen L. Lewis, James P. Keener, Aaron L Fogelson,
"Electrodiffusion-mediated swelling of a two-phase gel model of gastric mucus"
Gels
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Paul Bressloff, Samuel Carroll
"Spatiotemporal Dynamics of Neural Fields on Product Spaces"
SIAM Journal of Applied Dynamical Systems
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P, C. Bressloff
"Path-integral methods for analyzing the effects of fluctuations in stochastic hybrid neural networks."
J. Math. Neurosci.
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P. C. Bressloff
"Aggregation-fragmentation model of vesicular transport in neurons."
J. Phys. A
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P. C. Bressloff
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SIAM J. Appl. Math.
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P. C. Bressloff
"Feynman-Kac formula for stochastic hybrid systems"
Phys. Rev. E
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P. C. Bressloff
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Phys. Rev. E
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P. C. Bressloff
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J. Math, Neuro. 5
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P. C. Bressloff
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Phys. Rev.
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P. C. Bressloff
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Phys. Rev. E
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P. C. Bressloff
"Stochastic Fokker-Planck equation in random environments"
Phys. Rev.
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P. C. Bressloff
"Stochastic Liouville equation for particles driven by dichotomous environmental noise"
Phys. Rev.
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P. C. Bressloff
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Phys. Rev. E
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P. C. Bressloff
"Stochastic neural field model of stimulus-dependent neural variability"
PLoS Comp. Biol.
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P. C. Bressloff
"Stochastic switching in biology: from genotype to phenotype"
J. Phys.
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P. C. Bressloff
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J. Phys. A
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P. C. Bressloff
"Ultrasensitivity and noise amplification in a model of {\em V. harveyi} quorum sensing"
Phys. Rev. E
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P. C. Bressloff and B. Karamched
"A frequency-dependent decoding mechanism for axonal length sensing."
Front. Cellular Neurosci.
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P. C. Bressloff and B. Karamched
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SIAM J. Appl. Math
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P. C. Bressloff and B. Karamched
"Doubly stochastic Poisson model of flagellar length control"
SIAM J. Appl. Math.
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P. C. Bressloff and B. Karamched
"Model of reversible vesicular transport with exclusion"
J. Phys. A.
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P. C. Bressloff} and B. Karamched
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SIAM J. Appl. Math
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10.1137/16M110811X
P. C. Bressloff and B. Xu
"Stochastic active-transport model of cell polarization"
SIAM J. Appl. Math
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P. C. Bressloff and E. Levien
"Robustness of stochastic chemical reaction networks to extrinsic noise: the role of deficiency"
SIAM J on Multiscale Modelling and Simulation
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10.1137/17M1146609
P. C. Bressloff and E. Levien
"Synaptic democracy and active intracellular transport in axons."
Phys. Rev.
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P. C. Bressloff and H. Kim
"A search-and-capture model of cytoneme-mediated morphogen gradient formation"
Phys. Rev. E.
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P. C. Bressloff and H. Kim
"Bidirectional transport model of morphogen gradient formation via cytonemes"
Phys. Biol.
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P. C. Bressloff and H. Kim
"Bidirectional transport model of morphogen gradient formation via cytonemes"
Phys. Biol.
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P. C. Bressloff and J. Maclaurin
"A variational method for analyzing limit cycle oscillations in stochastic hybrid systems"
Chaos
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P. C. Bressloff and J. Maclaurin
"A variational method for analyzing stochastic limit cycle oscillators"
SIAM J. Appl. Dyn. Syst.
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P. C. Bressloff and J. Maclaurin
"Stochastic hybrid systems in cellular neuroscience"
J. Math. Neurosci.
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P. C. Bressloff and J. M. Newby
"Path-integrals and large deviations in stochastic hybrid systems"
Phys. Rev. E
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P. C. Bressloff and J. M. Newby
"Path-integrals and large deviations in stochastic hybrid systems"
Phys. Rev. E.
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P. C. Bressloff and J. M. Newby
"Stochastic hybrid model of spontaneous dendritic NMDA spikes"
Phys. Biol.
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P. C. Bressloff and J. M. Newby
"Stochastic hybrid model of spontaneous dendritic NMDA spikes"
Phys. Biol.
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10.1088/1478-3975/11/1/016006
P. C. Bressloff and J. M. Newby.
"Path-integrals and large deviations in stochastic hybrid systems"
Phys. Rev. E.
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P. C. Bressloff and J. Newby
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SIAM J. Appl. Math
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10.1137/120898978
P. C. Bressloff and J. Newby
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Rev. Mod. Phys.
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P. C. Bressloff and J. N. Maclaurin
"On the synchronization of stochastic hybrid oscillators driven by a common switching environment"
Chaos
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P. C. Bressloff and O. Faugeras
"On the Hamiltonian structure of large deviations in stochastic hybrid systems"
J. Stat. Mech
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P. C. Bressloff and O. Faugeras
"On the Hamiltonian structure of large deviations in stochastic hybrid systems"
J. Stat. Mech.
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P. C. Bressloff and S. Carroll
"Laminar neural field model of laterally propagating waves of orientation selectivity."
PLoS Comput.Biol.
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P. C. Bressloff and S. Carroll
"Nonlinear Langevin equations for the wandering of fronts in stochastic neural fields."
PLoS Comput. Biol.
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P. C. Bressloff and S. Carroll
"Stochastic neural fields as gradient dynamical systems"
Phys. Rev. E
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P. C. Bressloff and S. D. Lawley
"Dynamically active compartments coupled by a stochastically- gated gap junction"
J. Nonlinear Sci.
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P. C. Bressloff and S. D. Lawley
"Escape from a potential well with a switching boundary."
J. Phys. A
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P. C. Bressloff and S. D. Lawley
"Escape from subcellular domains with randomly switching boundaries."
Multi-scale Model. Simul.
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10.1137/15M1019258
P. C. Bressloff and S. D. Lawley
"Hybrid colored noise process with space-dependent switching rates"
Phys. Rev. E
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P. C. Bressloff and S. D. Lawley
"Mean first passage times for piecewise deterministic Markov processes and the effects of critical points"
Journal of Statistical Mechanics: Theory and Experiment
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P. C. Bressloff and S. D. Lawley
"Mean first passage times for piecewise deterministic Markov processes and the effects of critical points"
J. Stat. Mech.
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P. C. Bressloff and S. D. Lawley
"Moment equations for a piecewise deterministic."
J. Phys. A
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10.1088/1751-8113/48/10/105001
P. C. Bressloff and S. D. Lawley
"Residence times for a Brownian particle with temporal hetero-geneity"
J. Phys.
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P. C. Bressloff and S. D. Lawley
"Temporal disorder as a mechanism for spatially heterogeneous diffusion"
Phys. Rev. E
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P. C. Bressloff and S. D. Lawley.
"Moment equations for a piecewise deterministic PDE"
J. Phys. A.
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P. C. Bressloff and S. D. Lawley.
"Residence times for a Brownian particle with temporal hetero-geneity"
J. Phys. A
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P. C. Bressloff and S. M. Carroll
"Pattern-forming instabilities in neural fields on product spaces"
SIAM J. Appl. Dyn. Syst. 13
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P. C. Bressloff and Z. P. Kilpatrick
"Nonlinear Langevin equations for the wandering of fronts in stochastic neural fields"
SIAM J. Appl. Dyn. Syst.
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P. C. Bressloff and Z. P. Kilpatrick
"Nonlinear Langevin equations for the wandering of fronts in stochastic neural fields."
SIAM J. Appl. Dyns. Syst.
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P. C. Bressloff, B. M. Karamched, S. D. Lawley and E. Levien
"Diffusive transport in the presence of stochastically gated absorption"
Phys. Rev. E
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PC Bressloff, SD Lawley
"Diffusion on a tree with stochastically-gated nodes"
Journal of Physics A: Mathematical and Theoretical (Named to the journal's `Highlights of 2016' collection)
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PC Bressloff, SD Lawley
"Dynamically active compartments coupled by a stochastically-gated gap junction"
Journal of Nonlinear Science
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PC Bressloff, SD Lawley
"Escape from subcellular domains with randomly switching boundaries."
SIAM Multiscale Modeling and Simulation
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PC Bressloff, SD Lawley
"Temporal disorder as a mechanism for spatially heterogeneous diffusion."
Physical Review E
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PC Bressloff, SD Lawley.
"Diffusion on a tree with stochasticallygatednodes."
Journal of Physics A: Mathematical and Theoretical
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PC Bressloff, SD Lawley.
"Stochastically gated diffusion-limited reactions for a small target in a bounded domain."
Physical Review E,
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P C Bressloff, S D Lawley, and P Murphy
"Effective Permeability of Gap Junctions with Age-structured Switching"
SIAM J. Appl. Math
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10.1137/18M1223940
P. C. Bressloff, S. D. Lawley and P. Murphy
"Diffusion in an age-structured randomly switching environment"
J. Phys. A
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P. C. Bressloff, S. D. Lawley and P. Murphy
"Effective permeability of gap junctions with age- structured switching"
SIAM J. Appl. Math.
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10.1137/18M1223940
P. C. Bressloff, S. D. Lawley and P. Murphy
"Protein concentration gradients and switching diffusions"
Phys. Rev. E.
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P C Bressloff, S D Lawley, and P Murphy (equal contributors)
"Protein Concentration Gradients and Switching Diffusions"
Phys. Rev. E.
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PC Bressloff, SD Lawley & P Murphy
"Diffusion in an age-structured randomly switching environment"
Journal of Physics A: Mathematical and Theoretical
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PC Bressloff, SD Lawley & P Murphy
"Protein concentration gradients and switching diffusions"
Physical Review E.
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PC Bressloff, SD Lawley, P Murphy
"Diffusion in an age-structured randomly switching environment"
Journal of Physics A: Mathematical and Theoretical
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10.1088/1751-8121/aaca7c
PC Bressloff, SD Lawley, P Murphy.
"Protein concentration gradients and switching diffusions"
Physical Review E
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10.1103/PhysRevE.99.032409
P-I Ku, A. K. Miller, J. Ballew, V. Sandrin, F. R. Adler, andS. Saffarian.
"Identification of pauses during formation of HIV-1 Virus like particles"
Biophysical Journal
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P. L. Childs and J. P. Keener
"Stochastic Switching Dynamics of Flagellar Rotary Motors"
Journal of Physics A: Mathematical and Theoretical
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10.1088/1751-8121/aadc14
P. L. Childs and J. P. Keener
"Stochastic Switching Dynamics of Flagellar Rotary Motors"
Journal of Physics A: Mathematical and Theoretical
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https://doi.org/10.1088/1751-8121/aadc14
P Murphy, PC Bressloff, SD Lawley
"Interaction between switching diffusivities and cellular microstructure"
Multiscale Modeling and Simulation
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10.1137/19M1271245
Priscilla Elizondo, Aaron L. Fogelson
"A mathematical model of venous thrombosisinitiation"
Biophysical Journal
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10.1016/j.bpj.2016.10.030
Priscilla Elizondo, Aaron L. Fogelson
"A Mathematical Model of Venous Thrombosis Initiation"
Biophysical Journal
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Qinghai Zhang, Aaron L. Fogelson
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SIAM Journal of Scientific Computing
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Qinghai Zhang, Aaron L. Fogelson
"MARS: An analytic framework of interface tracking via mapping and adjusting regular semi-algebraic sets"
SIAM Journal on Numerical Analysis
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Qinghai Zhang, Aaron L. Fogelson
"MARS: An analytic framework of interface tracking via mapping and adjusting regular semi-algebraic sets."
SIAM Journal on Numerical Analysis
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Remien, C.H., Sussman, N.L. and Adler, F.R.
"Mathematical modelling of chronic acetaminophen metabolism and liver injury"
Mathematical Medicine and Biology
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R. Magi and J. P. Keener
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SIAM J. Appl. Math.
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R. Magi and J. P. Keener
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SIAM J. Appl. Math.
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R. S. Sorenson, M. J. Deshotel, K. Johnson, F. R. Adler, and L. E. Sieburth
"Arabidopsis mRNA decay landscape arises from specialized RNA decay substrates, decapping-mediated feedback, and redundancy"
Proceedings of the National Academy of Sciences
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R. S. Sorenson, M. J. Deshotel, K. Johnson, F. R. Adler, and L. E. Sieburth
"Arabidopsis mRNA decay landscape arises from specialized RNA decay substrates, decapping-mediated feedback, and redundancy"
Proceedings of the National Academy of Sciences
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10.1073/pnas.1712312115
R. Veeraraghavan, J. Lin, J. P. Keener, R. Gourdie and S. Poelzing
"Sodium Channels in the Cx43 Gap Junction Perinexus May Constitute a Cardiac Ephapse: An Experimental and Modeling Study"
Pflugers Archiv - European Journal of Physiology
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R. Viertel, A. Borisyuk
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J Theor Biol
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R. Viertel, A. Borisyuk
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J Theor Biol.
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10.1016/j.jtbi.2018.10.003
Sarthok Sircar, James P. Keener, and Aaron L. Fogelson
"The Effect of Divalent vs. Monovalent ions cd on the Swelling of Mucin-like Polyelectrolyte Gels: Governing Equations and Equilibrium Analysis"
Journal of Chemical Physics
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10.1063/1.4772405
S. Bewick, K. L Stuble, J.-P. Lessard, R. R. Dunn, F. R. Adler, and N. J. Sanders
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Ecology and Evolution,
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S. Carroll and P. C. Bressloff.
"Phase equation for patterns of orientation selectivity in a neural field model of visual cortex."
SIAM J. Appl. Dyn. Syst.
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S. Carroll, H. Brooks and P. C. Bressloff
"Bifurcation analysis of pattern formation in a two-dimensional hybrid reactiontransport model"
Physica D
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10.1016/j.physd.2019.132274
SD Lawley
"A probabilistic analysis of volume transmission in the brain"
SIAM Journal on Applied Mathematics
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SD Lawley
"Blowup from randomly switching between stable boundary conditions for the heat equation"
Communications in Mathematical Sciences
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SD Lawley
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SIAM Journal on Applied Dynamical Systems
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SD Lawley.
"Boundary value problems for statistics of diffusion in a randomly switching environment: PDE and SDE perspectives."
SIAM j. Appl. Dyn. Syst.
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10.1137/15M1038426
S. D. Lawley and J. P. Keener
"A New Derivation of Robin Boundary Conditions through Homogenization of a Stochastically Switching Boundary"
SIAM J. Appl. Dyn. Sys.
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S. D. Lawley and J. P. Keener
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SIAM J. Appl. Math
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10.1137/18M1185041
S. D. Lawley and J. P. Keener
"Including rebinding reactions in well-mixed models of distributive biochemical reactions"
Biophysical J.
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S. D. Lawley and J. P. Keener
"Rebinding in Biochemical Reactions on Membranes"
Phys Biol
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SD Lawley, CE Miles
"Diffusive search for diffusing targets with fluctuating diffusivity and gating"
Journal of Nonlinear Science
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SD Lawley, CE Miles
"How receptor surface diffusion and cell rotation increase association rates"
SIAM Journal on Applied Mathematics
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10.1137/18M1217188
SD Lawley, J Best, MC Reed
"Neurotransmitter concentrations in the presence of neural switching in one dimension"
Discrete and Continuous Dynamical Systems - Series B
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SD Lawley, JB Madrid
"A probabilistic approach to extreme statistics of Brownian escape times in dimensions 1, 2, and 3"
Journal of Nonlinear Science
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10.1007/s00332-019-09605-9
SD Lawley, JB Madrid
"First passage time distribution of multiple impatient particles with reversible binding"
Journal of Chemical Physics
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10.1063/1.5098312
SD Lawley & JP Keener
"Electrodiffusive flux through a stochastically gated ion channel"
SIAM Journal on Applied Mathematics
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SD Lawley, JP Keener
"Including rebinding reactions in well-mixed models of distributive biochemical reactions"
Biophysical Journal
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SD Lawley, JP Keener
"Rebinding in biochemical reactions on membranes"
Physical Biology
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SD Lawley, JP Keener.
"Including rebinding reactions in well-mixed models of distributive biochemical reactions"
Biophysical Journal,
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SD Lawley, JP Keener.
"Including rebinding reactions in well-mixedmodels of distributive biochemical reactions."
Biophysical Journal
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10.1016/j.bpj.2016.10.008
SD Lawley, M Tuft, HA Brooks
"Coarsegraining intermittent intracellular transport: Two- and three-dimensional models."
Physical Review E,
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SD Lawley, V Shankar
"Asymptotic and numerical analysis of a stochastic PDE model of volume transmission"
SIAM J on Multiscale Modeling and Simulation
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10.1137/18M1230773
S. George, K. J. Sciuto, J. Lin Ph.D, M. Salama Ph.D, J. P. Keener Ph.D, R. Gourdie Ph.D, S. Poelzing Ph.D
"Effects of Extracellular Sodium and Potassium on Cardiac Conduction in Mice with Reduced Gap Junctional Coupling"
Pflugers Archiv - European J. Physiology
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S. Ghosh, J. L. Waite, D. H. Clayton, and F. R. Adler
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J Sci Comput.
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S. K. Mageswaran, M. G. Dixon, M. Curtiss, J. P. Keener and M. Babst
"Binding to any ESCRT can mediate ubiquitin-independent cargo sorting"
Traffic
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S. K. Mageswaran, M. G. Dixon, M. Curtiss, J. P. Keener and M. Babst
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Skorczewski, Tyler; Crowl Erickson, Lindsay; and Fogelson, Aaron L.
"Platelet Motion near a Vessel Wall or Thrombus Surface in Two-Dimensional Whole Blood Simulations"
Biophysical Journal; Subject of "New And Notable" article, 2013
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10.1016/j.bpj.2013.01.061
S. M. Carroll and P. C. Bressloff
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Physica D 285
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S. M. Carroll and P. C. Bressloff
"Symmetric Bifurcations in a Neural Field Model for encoding the direction of spatial contrast gradients"
SIAM J. Appl. Dyn. Syst.
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Smith AM, Adler FR, Ribeiro RM, Gutenkunst RN, McAuley JL, McCullers JA, Perelson AS.
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PLoS Pathog.
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S. R. Carroll and P. C. Bressloff
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SIAM J. Appl. Dyn. Syst.
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10.1137/16M1076125
S. R. Carroll and P. C. Bressloff
"Symmetric Bifurcations in a Neural Field Model for encoding the direction of spatial contrast gradients"
SIAM J. Appl. Dyn. Syst.
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Travis Mandel
"Theta bases are atomic"
Compositio Mathematica
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