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Award Abstract # 1206757
Digitization TCN: Collaborative Research: Digitizing Fossils to Enable New Syntheses in Biogeography - Creating a PALEONICHES-TCN

NSF Org: DBI
Division of Biological Infrastructure
Recipient: UNIVERSITY OF KANSAS CENTER FOR RESEARCH INC
Initial Amendment Date: April 18, 2012
Latest Amendment Date: June 5, 2017
Award Number: 1206757
Award Instrument: Standard Grant
Program Manager: Reed Beaman
rsbeaman@nsf.gov
 (703)292-7163
DBI
 Division of Biological Infrastructure
BIO
 Directorate for Biological Sciences
Start Date: July 1, 2012
End Date: June 30, 2018 (Estimated)
Total Intended Award Amount: $600,000.00
Total Awarded Amount to Date: $600,000.00
Funds Obligated to Date: FY 2012 = $600,000.00
History of Investigator:
  • Bruce Lieberman (Principal Investigator)
    blieber@ku.edu
  • James Beach (Co-Principal Investigator)
  • Una Farrell (Co-Principal Investigator)
Recipient Sponsored Research Office: University of Kansas Center for Research Inc
2385 IRVING HILL RD
LAWRENCE
KS  US  66045-7563
(785)864-3441
Sponsor Congressional District: 01
Primary Place of Performance: University of Kansas Center for Research Inc
KS  US  66045-7568
Primary Place of Performance
Congressional District:
01
Unique Entity Identifier (UEI): SSUJB3GSH8A5
Parent UEI: SSUJB3GSH8A5
NSF Program(s): EARTHSCOPE-OPERATIONS & MAINTE,
Digitization,
Sedimentary Geo & Paleobiology,
EPSCoR Co-Funding
Primary Program Source: 01001213DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 016F, 6895, 7459, 9150
Program Element Code(s): 016F00, 689500, 745900, 915000
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

Museum collections of fossils, along with their associated locality data, provide millions of records representing data on the temporal and geographic distribution of species in deep time. However, to reach their greatest scientific potential, these collections data need to be available on-line and in a format that facilitates quantitative biogeographic analyses. We will enter information about the age and precise location of fossil specimens from parts of several key paleontological collections into electronic databases. During this process improvements to computer programs for collections will be enhanced to allow paleontological specimens to be integrated with modern specimen data, thereby benefiting research on distribution of organisms over time. Our efforts will digitize nearly 450,000 specimens belonging to 900 species from several museums throughout the U.S. and will focus on three different time periods in the history of life: the Ordovician, Pennsylvanian, and Neogene. We will create on line digital atlases illustrating and describing these fossils and providing maps showing where they can be found. We will also create an 'app' so these atlases can be used on handheld devices out in the field.

The museum collections and fossils provide large amounts of data useful for studying what causes species to migrate, go extinct, or evolve over long time periods. They are of great relevance for considering how global change has and will continue to affect life on this planet. Our study will make these data available on line and accessible to scientists, facilitating many scientific analyses. The on-line and portable device digital atlases will be useful for educating amateur paleontologists and K-12 students about fossils both in classrooms and in the field. We will also provide training to students and scholars. This award is made as part of the National Resource for Digitization of Biological Collections through the Advancing Digitization of Biological Collections program and all data resulting from this award will be available through the national resource (iDigBio.org).

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 21)
Casey, M. M., E. E. Saupe, and B. S. Lieberman "The biogeography of ?sluggish? evolution: the impact of geographic range size on extinction selectivity in Pennsylvanian brachiopods of the North American midcontinent" Geological Society of America Annual Meeting, Baltimore, MD, Abstracts with Programs , 2015 https://gsa.confex.com/gsa/2015AM/webprogram/Paper261884.html
Cavner, J., J. Beach, A. Stewart, & C. J. Grady ". ?Adding Phylogenies to QGIS and Lifemapper for Evolutionary Studies of Species Diversity? presented at FOSS4G, Portland, OR. Pending publication in OSGEO Journal (Accepted)." OSGEO. Foss4G-PDX , v.14 , 2015 https://journal.osgeo.org/index.php/journal/article/download/224/190
Dattilo, B.F., Brett, C.E., Meyer, D.L., Freeman, R.L., Hunda, B.R., Holland, S.M., Stigall, A.L., Deline, B., Sumrall, C.D., Wilson, M.A. "Non-academic paleontologists are essential to the survival of paleontology: Lessons from the Cincinnati school." Geological Society of America, Abstracts with Programs , v.47 , 2015 , p.480
Hendricks, J. R., Stigall, A. L., and B. S. Lieberman "The Digital Atlas of Ancient Life: delivering information on paleontology and biogeography via the web" Paleontologia Electronica , v.18 , 2015 , p.3E
Karim, T. S., Burkhalter, R., Farrell, U.C., Molineux, A., Nelson, G., Utrup, J. and Butts, S. H. "Digitization workflows for paleontology collections" Palaeontologia Electronica , 2016
Kimmig, J., Meyer, R. C., and B. S. Lieberman "Herpetogaster from the early Cambrian (Series 2: Stage 4) of Nevada and its implications for the early evolution of deuterostomes" Geological Magazine , v.155 , 2018 http://doi:10.1017/S0016756818000389
Kimmig, J., Strotz, L. C., and B. S. Lieberman "The stalked filter feeder Siphusauctum lloydguntheri n. sp. from the middle Cambrian (Series 3: Stage 5) Spence Shale of Utah: its biological affinities and taphonomy." Journal of Paleontology , v.91 , 2017 , p.902 https://doi:10.1017/jpa.2017.57
Lieberman, B. S., and E. E. Saupe. "Palaeoniches get stiches: analyses of niches informing macroevolutionary theory" Lethaia , v.49 , 2016 , p.145
Lieberman, B. S, J. R. Hendricks, A. L. Stigall, U. C. Farrell, and J. H. Beach "Digital fossils: There?s an app for that" Geological Society of America Annual Meeting, Baltimore, MD, Abstracts with Programs , 2015 https://gsa.confex.com/gsa/2015AM/webprogram/Paper261885.html
Lieberman, B. S., Kurkewicz, R., Shinogle, H. C., Kimmig, J., and B. MacGabhann "Disc-shaped fossils resembling porpitids or eldonids from the early Cambrian (Series 2: Stage 4) of western, USA" PeerJ , v.5 , 2017 , p.e3312 10.7717/peerj.3312
Lieberman, B. S., Kurkewicz, R., Shinogle, H. C., Kimmig, J., and B. MacGabhann "Disc-shaped fossils resembling porpitids or eldonids from the early Cambrian (Series 2: Stage 4) of western, USA." PeerJ , v.5:e3312 , 2017 , p.1 https://doi.org/10.7717/peerj.3312
(Showing: 1 - 10 of 21)

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

A key outcome of our work has been a dramatic increase in the availability of and access to specimens in our collections, along with their associated data. This information has been made available to both the scientific community and also the general public.  In particular, we have databased more than 295,000 fossil specimens housed at the Biodiversity Institute, University of Kansas (KU); across our entire project and including all of our collaborators at other museums more than 1,000,000 specimens have been databased.  We at KU have also georeferenced more than 11,600 fossil localities that these specimens come from (with 5,000 more localities georeferenced across the entire project as well), so now the occurrences of these specimens can be pinpointed on a map using latitude and longitude values. The specimen and locality data are shared via the web at www.iDigBio.org and www.GBIF.org , the two major places where scientists search for collections data, as well as at the KU website https://biodiversity.ku.edu/invertebrate-paleontology/collections/collections-search .

Analysis of the specimen data collected as part of the project has led to the publication of several scientific research results and insights that in essence focus on where marine fossil species occur, how their geographic distributions have changed through time, the various factors that cause these changes, and what influences their survival or extinction over the long term.  For instance, we were able to use specimen data in conjunction with computer mapping software and various statistical analyses to consider how past climate changes affected marine species that have lived along the eastern coast of the US for the last several million years.  We found that it was primarily climate, as opposed to competition, that determined where species lived.  Further, these species remained stable in their environmental preferences even as climate changed significantly.  Basically, that meant that as climate changed species were not changing their habitats.  Instead, their geographic ranges either moved up or down the coast or nearer or further from shore, tracking their preferred environment; however, in considering many different species, we found that each often responded distinctly in terms of the direction of their migrations and how far they migrated. This is because each species has a mostly unique set of environmental preferences.  As part of our research we also found that whether an organism was more or less active played an important role in determining if the species it belonged to was likely to survive or go extinct.  Ultimately our work in this area and the data we generated allowed us to consider several of the various factors that cause species to evolve, remain stable, or go extinct over long periods of time.  

We also considered how some of the marine mollusk species found along the eastern coast of the US today, especially some of the ones most crucial for humans because they represent important food sources for us or fish that we harvest, would respond to predicted future climate changes.  What we found was that many of these species are likely to be quite negatively affected by future climate changes; if the changes happen to be towards the higher end of the range forecasted, then many of these species are likely to go extinct.

The project also led to broader impacts and products for outreach.  For example, as part of the project at KU we trained and supported 2 post-doctoral fellows, 5 graduate students, and 7 undergraduate students. We, along with our partners, also share information online about the many fossil species we databased through resources such as the “Digital Atlas of Ancient Life”, http://www.digitalatlasofancientlife.org/ , and also an app of the same name, http://www.digitalatlasofancientlife.org/digital-atlas-app-now-available/ , that provides content for handheld devices.  The information we provide with these resources includes descriptions, images, and maps, making it possible for amateur fossil collectors and the general public to learn where to find fossils and how to identify them. 

 

 


Last Modified: 08/08/2018
Modified by: Bruce S Lieberman

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