
NSF Org: |
DBI Division of Biological Infrastructure |
Recipient: |
|
Initial Amendment Date: | May 6, 2011 |
Latest Amendment Date: | August 22, 2014 |
Award Number: | 1062193 |
Award Instrument: | Continuing Grant |
Program Manager: |
Peter McCartney
DBI Division of Biological Infrastructure BIO Directorate for Biological Sciences |
Start Date: | May 1, 2011 |
End Date: | April 30, 2016 (Estimated) |
Total Intended Award Amount: | $1,871,968.00 |
Total Awarded Amount to Date: | $2,076,373.00 |
Funds Obligated to Date: |
FY 2012 = $641,145.00 FY 2013 = $646,791.00 FY 2014 = $204,405.00 |
History of Investigator: |
|
Recipient Sponsored Research Office: |
1608 4TH ST STE 201 BERKELEY CA US 94710-1749 (510)643-3891 |
Sponsor Congressional District: |
|
Primary Place of Performance: |
1608 4TH ST STE 201 BERKELEY CA US 94710-1749 |
Primary Place of
Performance Congressional District: |
|
Unique Entity Identifier (UEI): |
|
Parent UEI: |
|
NSF Program(s): | ADVANCES IN BIO INFORMATICS |
Primary Program Source: |
01001213DB NSF RESEARCH & RELATED ACTIVIT 01001314DB NSF RESEARCH & RELATED ACTIVIT 01001415DB NSF RESEARCH & RELATED ACTIVIT |
Program Reference Code(s): |
|
Program Element Code(s): |
|
Award Agency Code: | 4900 |
Fund Agency Code: | 4900 |
Assistance Listing Number(s): | 47.074 |
ABSTRACT
This collaborative award is made to implement an innovative model for biodiversity networks and data sharing called VertNet (http://vertnet.org). Biodiversity is in a crisis caused by multiple human impacts on the environment, and documentation of spatial and temporal biodiversity changes is immediately and urgently needed in order to address this crisis. The community of vertebrate natural history collections has begun to meet this need by establishing social and technological infrastructures that provide open access to data describing planetary occurrences of biological specimens. Taxon-specific data sharing initiatives such as MaNIS, ORNIS, HerpNET and FishNet 2 currently provide, in total, over 85 million records documenting where vertebrates occur. Together these networks include 171 collections from 12 countries, with an additional 52 collections (20 countries) committed to participation. Already, they are accessed at a rate of nearly 2.5 million records per week. Participation in each of these networks has far exceeded expectations, resulting in growing issues of scalability, performance, sustainability, and ability to incorporate new members. VertNet will solve these impediments by moving to a cloud computing solution in which providers and users synchronize changes to a cloud-based network of vertebrate biodiversity data. Cloud computing is a pay-per-use model utilizing internet-based, third party computing resources that are fast and dynamically scalable. The new VertNet model removes the requirement and cost to contributors to buy or maintain their own servers while leveraging all of the data integrity and replication services provided by the cloud. Under the new model, contributors will use a web-based administrative interface to create a "provider" in the cloud. Subsequent updates will use the same local application to publish differences (additions, changes, deletions) since initial publishing. Data storage in the cloud will contain the primary data published from all contributors as persistently and uniquely available records. In addition, it will contain summary information about data aggregations, and will incorporate data from other sources such as auxiliary data look-ups, user feedback, and data quality assessments. VertNet will provide open access to data with new capabilities for discovery and visualization, and will integrate with several existing biodiversity and collection management applications. Development of VertNet will transform the use of vertebrate biodiversity data for cross-disciplinary research, conservation, and policy-making.
The four predecessor projects (MaNIS, ORNIS, HerpNET, FishNet 2) have built a strong tradition of biodiversity informatics training and community-building. VertNet will continue this tradition, with impacts extending beyond the funded institutions. Specifically, VertNet will engage students from across the United States in two Summer Internships in Biodiversity Informatics and two Workshops in Biodiversity Informatics. In addition, undergraduate students will be offered volunteer apprenticeships through existing programs at UC Berkeley. An additional workshop that involves the broader community will address strategies for long-term sustainability of digitization and data-sharing efforts.
PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH
Note:
When clicking on a Digital Object Identifier (DOI) number, you will be taken to an external
site maintained by the publisher. Some full text articles may not yet be available without a
charge during the embargo (administrative interval).
Some links on this page may take you to non-federal websites. Their policies may differ from
this site.
PROJECT OUTCOMES REPORT
Disclaimer
This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.
The VertNet project was established with four foundational objectives: (1) to facilitate open web access to specimen data from museums, educational institutions, and government repositories; (2) to enhance the value of these specimen collections by making them accessible to the public; (3) to provide services that would permit these collections to focus their resources on curation; and (4) to design a data-sharing network that could be adopted easily by other disciplines with similar needs.
VertNet is a collaboration between four U.S. universities (University of California at Berkeley, University of Colorado at Boulder, University of Kansas, and Tulane University) that built upon the lessons and strengths of four predecessor projects (MaNIS, ORNIS, HerpNet, FishNet 2). As a result, VertNet is a thriving data-sharing community and network of data publishers that links hundreds of biodiversity collections and repositories across the United States and rest of the world. As of June 2016, this network includes 212 institutions representing 696 collections. The VertNet project has made more than 300 million records available to the public via the vertebrate-focused data portal (http://www.vertnet.org) and in support of other major biodiversity projects in the U.S. (https://www.idigbio.org) and abroad (http://www.gbif.org).
Access to data from these biodiversity collections is of critical importance to educators, researchers, scientists, and policy-makers in addressing pressing challenges and questions about global climate change and the associated loss of biodiversity. VertNet has addressed the international demand for quick, reliable access to high quality data that describes biodiversity so that any person or organization, from a seventh-grade teacher in Ohio to the Army Corps of Engineers, can and will have the information available to them to generate lessons plans, monitor changes in the environment, and make informed decisions about human development, energy policy, and national defense.
Intellectual Merit. The intellectual merit of the VertNet project is threefold. First, VertNet has addressed the critical need for high quality data for biodiversity research, monitoring, and decision-making by providing an integrated, publicly accessible, and cost-effective online data portal for vertebrates. Second, VertNet has developed a new model for making all of these data accessible in a way that makes it easy for anybody to find biodiversity data quickly, and has been emulated by other large-scale biodiversity projects in the U.S. and around the world. This new model has become an essential tool in the efforts of both professionals and hobbyists to better understand the world in which we live. Third, VertNet has transformed how biodiversity science is conducted. Researchers and educators who endeavor to model species distributions, determine overall patterns of global biodiversity, and document biodiversity changes over time now have access to new integrative tools and biodiversity data that increase the quality and usefulness of information contributed by the VertNet community.
Broader Impacts. Perhaps the most enduring result of the VertNet project is its commitment to providing training to people who use biodiversity data. During the funding period, VertNet conducted more than 60 training workshops and webinars to teach members of the community the skills necessary to become successful researchers, educators, and students. Through these workshops, VertNet has extended the benefits of its funding far beyond the four collaborating institutions by training more than 1500 students, educators, museum professionals, researchers, and scientists globally, with considerable...
Please report errors in award information by writing to: awardsearch@nsf.gov.