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Award Abstract # 1036537
Collaborative Research: WormNet II: Assembling the Annelid Tree of Life

NSF Org: DEB
Division Of Environmental Biology
Recipient: AUBURN UNIVERSITY
Initial Amendment Date: September 1, 2010
Latest Amendment Date: April 29, 2015
Award Number: 1036537
Award Instrument: Continuing Grant
Program Manager: Simon Malcomber
smalcomb@nsf.gov
 (703)292-8227
DEB
 Division Of Environmental Biology
BIO
 Directorate for Biological Sciences
Start Date: January 1, 2011
End Date: December 31, 2016 (Estimated)
Total Intended Award Amount: $1,427,863.00
Total Awarded Amount to Date: $1,427,863.00
Funds Obligated to Date: FY 2010 = $361,992.00
FY 2011 = $1,065,871.00
History of Investigator:
  • Kenneth Halanych (Principal Investigator)
    halanychk@uncw.edu
  • Torsten Struck (Co-Principal Investigator)
  • Scott Santos (Former Co-Principal Investigator)
Recipient Sponsored Research Office: Auburn University
321-A INGRAM HALL
AUBURN
AL  US  36849-0001
(334)844-4438
Sponsor Congressional District: 03
Primary Place of Performance: Auburn University
321-A INGRAM HALL
AUBURN
AL  US  36849-0001
Primary Place of Performance
Congressional District:
03
Unique Entity Identifier (UEI): DMQNDJDHTDG4
Parent UEI: DMQNDJDHTDG4
NSF Program(s): ASSEMBLING THE TREE OF LIFE
Primary Program Source: 01001011DB NSF RESEARCH & RELATED ACTIVIT
01001112DB NSF RESEARCH & RELATED ACTIVIT

01001213DB NSF RESEARCH & RELATED ACTIVIT

01001314DB NSF RESEARCH & RELATED ACTIVIT

01001415DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 7689, 9150, 9169, EGCH
Program Element Code(s): 768900
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

The more than 16,000 recognized species of annelid worms exhibit immense morphological diversity and include such distinct groups as fireworms, earthworms, bloodworms, and leeches. As sediment feeders, scavengers, and predators, annelids occupy terrestrial and aquatic habitats worldwide and are the most abundant fauna (larger than 1 millimeter) in the deep sea, Earth's most extensive habitat. Annelids have economic importance as bait, pests, invasive species (e.g., oyster borers) and ecosystem engineers. Nonetheless, many fundamental questions about annelids remain unresolved because knowledge of their diversity and evolutionary history is lacking. To fill this gap, this international project will assemble the annelid family tree using a large-scale, multi-tiered approach. The oldest relationships will be examined with high-throughput DNA genome sequencing techniques. Recent relationships will be resolved with multi-gene DNA approaches and a community-based sequencing service that will examine approximately 3000 species.

As one of the few segmented phyla, annelids are integral to understanding animal evolution. This project has significant interdisciplinary implications in fields such as developmental biology, paleontology, marine biology, physiology and evolution. Specimens, data, and educational resources will be publicly available. Extensive human resource development includes training more than 25 undergraduates, 5 graduate students and 4 postdoctoral researchers at four institutions, and recruitment of underrepresented groups. K-12 outreach will foster broad scientific participation.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 17)
Brannock, P.M., and K. M. Halanych "Meiofaunal community analysis by high-throughput sequencing: Comparison of extraction, quality filtering, and clustering methods." Marine Genomics , v.23 , 2015 , p.67 http://dx.doi.org/10.1016/j.margen.2015.05.007
Costa-Paiva, E. M., N. V. Whelan, D. S. Waits, S. R. Santos, C. G. Schrago and K. M. Halanych "Discovery and evolution of novel hemerythrin genes in annelid worms" BMC Evolutionary Biology , v.17 , 2017 , p.85 10.1186/s12862-017-0933-z
Halanych, K. M. "How our view of animal phylogeny was reshaped by molecular approaches: Lessons learned" Organisms, Diversity and Evolution. , v.16 , 2016 , p.319
Halanych, K. M. and K. M. Kocot "Repurposed Transcriptomic Data Facilitate Discovery of Innate Immunity Toll-Like Receptor (TLR) Genes Across Lophotrochozoa" Biological Bulletin , v.227 , 2014 , p.201
Havird, J.C., K. M. Kocot, P. M. Brannock, J. T. Cannon, D. S. Waits, D. A. Weese, S. R. Santos, K. M. Halanych. "Reconstruction of cyclooxygenase evolution in animals suggests variable, lineage-specific prostaglandin synthesis pathways." Journal of Molecular Evolution. , v.80 , 2015 , p.193 doi:10.1007/s00239-015-9670-3
Kocot, KM,, Citarella, MR, Moroz, LL and Halanych, KM "PhyloTreePruner: A Phylogenetic Tree-Based Approachfor Selection of Orthologous Sequences for Phylogenomics" Evolutionary Bioinformatics , v.9 , 2013 , p.429 doi: 10.4137/EBO.S12813
Kocot, KM, Halanych, KM, and Krug, PJ "Phylogenomics supports Panpulmonata: Opisthobranch paraphyly and key evolutionary steps in a major radiation of gastropod molluscs" Molecular Phylogenetics and Evolution , v.69 , 2013 , p.764 10.1016/j.ympev.2013.07.001
Kocot, K. M., T. H. Struck, J. Merkel, D. S. Waits, C. Todt, P. M. Brannock, D.A. Weese, J. T. Cannon, L. L. Moroz, B. Leib, and K. M. Halanych. "Phylogenomics of Lophotrochozoa with consideration of systematic error." Systematic Biology , v.66 , 2017 , p.256
Li, Y., K.M. Kocot, C. Schander, S.R. Santos, D. J. Thornhill and K. M. Halanych "Mitogenomics reveals phylogeny and dramatic size variations of control regions in the deep-sea family Siboglinidae (Annelida)." Molecular Phylogenetics and Evolution , v.85 , 2015 , p.221 http://dx.doi.org/10.1016/j.ympev.2015.02.008
Li, Y., K. M. Kocot, N. V. Whelan, S. R. Santos, D. S. Waits, D. J. Thornhill, K. M. Halanych. "Phylogenomics of tubeworms (Siboglinidae, Annelida) and comparative performance of reconstruction methods." Zoologica Scripta , v.46 , 2017 , p.200
Struck, T.H., A. Golombek, A.Weiger, F. A.Franke, W. Westheide, G. Purschke, C. Bleidorn, K. M. Halanych. "The evolution of annelids reveals two adaptive routes to the interstitial realm." Current Biology , v.25 , 2015 , p.1993 http://dx.doi.org/10.1016/j.cub.2015.06.007
(Showing: 1 - 10 of 17)

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

Intellectual merit

Annelids comprise >16000 recognized species that occupy a wide range of marine, freshwater and terrestrial environments. Many members of this ancient group are ecologically and economically important as ecosystem engineers, as the basis of commercial enterprises, as indicators of environmental health, as invasive or pest species and as being arguably the most abundant metazoans in the deep sea, which covers 60% of the planet. As one of the few segmented phyla, annelids are key to understanding the evolution of bilaterian body plans. During the course of this award, we have used cutting-edge genomic technologies to discover and understand the evolutionary history of this important group. Analyses conducted with the genomic data have made clear that annelids are a much more diverse group than previously recognized and they contain several worm-like groups formerly recognized as separate animal phyla. We also place the fresh water and terrestrial annelids (clitellates) with specific groups of sedentary polychaetous worms. Also lineages that branched off from early near the base of the annelid tree, appear to have been much more complex than traditionally understood. This work has produced a large number of genetic resources that are being used to explore the evolution of key gene families across the annelids, mollusks and similar phyla. Using this information, we have achieved the main goal of this award which was to reconstruct a robust evolutionary tree of annelids - the sixth most species rich animal phylum.

We also conducted several studies that were taxonomically focused on specific groups. For example, we examined the evolution and blood pigments of siboglinid worms which live in chemosynthetic environments. Also we assessed the biogeography and population genetics of specific species, including Platynereis dumerilii which is a model system for development. Such studies help us understand the breadth and variation of these animals.

Another major aspect of this work was development of bioinformatic pipelines and tools which aided the reconstruction of the annelid tree and allowed analyses of genomic data. These tools have since been applied to other organismal groups and are helping establish standard protocols for evaluation of phylogenomic data.

 

Broader Impacts

Our results will have significant implications for multiple fields, such as developmental biology, paleontology, physiology, and evolution. Specimens,  data, and other resources have been made publicly available, and results have been published in high-impact, peer-reviewed journals. Additionally, we conducted numerous outreach activities, for K-8 students (roughly 300 students per year), teachers, and the general public, that improve appreciation of annelid diversity and the significance of evolutionary analyses in understanding the diversity of life. Other major impacts of the project include the training of undergraduate (>5) and graduate students (>5) and a postdoc at Auburn University. This work also included international collaborative efforts with researchers in Germany, Brazil, Norway, Australia and South Africa. Such international collaboration promotes intellectual interchange and helps students prepare for future collegial interactions. Throughout the project, underrepresented groups have participated.

 


Last Modified: 03/31/2017
Modified by: Kenneth M Halanych

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