Award Abstract # 2202693
NSF Center for Computer-Assisted Synthesis

NSF Org: CHE
Division Of Chemistry
Recipient: UNIVERSITY OF NOTRE DAME DU LAC
Initial Amendment Date: August 2, 2022
Latest Amendment Date: August 5, 2024
Award Number: 2202693
Award Instrument: Cooperative Agreement
Program Manager: Katharine Covert
kcovert@nsf.gov
 (703)292-4950
CHE
 Division Of Chemistry
MPS
 Directorate for Mathematical and Physical Sciences
Start Date: September 1, 2022
End Date: August 31, 2027 (Estimated)
Total Intended Award Amount: $20,000,000.00
Total Awarded Amount to Date: $11,800,000.00
Funds Obligated to Date: FY 2022 = $4,000,000.00
FY 2023 = $4,000,000.00

FY 2024 = $3,800,000.00
History of Investigator:
  • Olaf Wiest (Principal Investigator)
    owiest@nd.edu
Recipient Sponsored Research Office: University of Notre Dame
940 GRACE HALL
NOTRE DAME
IN  US  46556-5708
(574)631-7432
Sponsor Congressional District: 02
Primary Place of Performance: University of Nore Dame
940 Grace Hall
South Bend
IN  US  46556-5708
Primary Place of Performance
Congressional District:
02
Unique Entity Identifier (UEI): FPU6XGFXMBE9
Parent UEI: FPU6XGFXMBE9
NSF Program(s): OFFICE OF MULTIDISCIPLINARY AC,
CHE CENTERS
Primary Program Source: 01002223DB NSF RESEARCH & RELATED ACTIVIT
01002324DB NSF RESEARCH & RELATED ACTIVIT

01002425DB NSF RESEARCH & RELATED ACTIVIT

01002526DB NSF RESEARCH & RELATED ACTIVIT

01002627DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 062Z, 075Z, 090Z, 8037, 8084, 8248, 8396, 8398, 8650, 9251, 9263
Program Element Code(s): 125300, 199500
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.049

ABSTRACT

The NSF Center for Computer Assisted Synthesis (CCAS) is a nexus of collaboration, innovation, and education that brings together data science and chemical synthesis. The highly interdisciplinary CCAS team, composed of synthetic organic chemists, computational chemists, and computer scientists, is developing data science tools and computational workflows that will likely shape the future of synthetic chemistry and the fields it enables, such as medicine, materials science, and energy research. This site?s impacts are being further amplified by an extensive network of academic, industrial and non-profit partners and research centers, and its data chemistry tools are being shared with the research community through open-source clearinghouses. All of this provides CCAS with a unique opportunity to develop, exchange, and evaluate ideas in the field of data chemistry, and its shared tools and training will empower students, practicing chemists, and the chemical industry to effectively apply data science to their own chemical research.

Led by organic chemists at every stage, CCAS focuses on use-inspired data science research that drives the development of new data types and machine learning (ML) methods that enable the discovery of novel reactions and yield new scientific insights. The four scientific thrusts include (i) developing effective ML tools for optimizing chemical reactions, (ii) gaining mechanistic understanding through interpretable statistical models and electronic structure calculations, (iii) predicting reaction outcomes to anticipate and discover new reactivity and (iv) integrating these tools for the efficient planning and execution of multistep syntheses of complex molecules. To accomplish these goals, three themes are interwoven into each of the thrusts: (a) new structured data types that are amenable to high-throughput experimentation and predictive models from the ground up, going beyond the information from commonly used databases, (b) molecular and reaction representations that bridge descriptor-based and structure-based deep learning paradigms, and (c) algorithms specifically designed for the low data regimes prevalent throughout chemistry. Through these integrated research themes and thrusts, CCAS constructs and shares data chemistry platforms that are expected to enable chemists to tackle ambitious challenges that the field is currently under-equipped to pursue. The data chemistry platform also will open up new opportunities in undergraduate and graduate education, and through partnerships with the Data Chemists Network and research opportunities for chemists with disabilities, CCAS seeks to broaden the participation of researchers from underrepresented groups.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 42)
Bartholomew, G. Logan and Kraus, Samantha L. and Karas, Lucas J. and Carpaneto, Filippo and Bennett, Raffeal and Sigman, Matthew S. and Yeung, Charles S. and Sarpong, Richmond "14 N to 15 N Isotopic Exchange of Nitrogen Heteroaromatics through Skeletal Editing" Journal of the American Chemical Society , v.146 , 2024 https://doi.org/10.1021/jacs.3c11515 Citation Details
Boiko, Daniil A. and MacKnight, Robert and Kline, Ben and Gomes, Gabe "Autonomous chemical research with large language models" Nature , v.624 , 2023 https://doi.org/10.1038/s41586-023-06792-0 Citation Details
Casetti, Nicholas and AlfonsoRamos, Javier E. and Coley, Connor W. and Stuyver, Thijs "Combining Molecular Quantum Mechanical Modeling and Machine Learning for Accelerated Reaction Screening and Discovery" Chemistry A European Journal , 2023 https://doi.org/10.1002/chem.202301957 Citation Details
de_Moraes, Lygia_Silva and Burch, Jessica_E and Delgadillo, David_A and Rodriguez, Isabel_Hernandez and Mai, Huanghao and Smith, Austin_G and Caille, Seb and Walker, Shawn_D and Wurz, Ryan_P and Cee, Victor_J and Rodriguez, Jose_A and Gostovic, Dan and Qu "Structural Elucidation and Absolute Stereochemistry for Pharma Compounds Using MicroED" Organic Letters , v.26 , 2024 https://doi.org/10.1021/acs.orglett.4c01865 Citation Details
Dotson, Jordan J. and van Dijk, Lucy and Timmerman, Jacob C. and Grosslight, Samantha and Walroth, Richard C. and Gosselin, Francis and Püntener, Kurt and Mack, Kyle A. and Sigman, Matthew S. "Data-Driven Multi-Objective Optimization Tactics for Catalytic Asymmetric Reactions Using Bisphosphine Ligands" Journal of the American Chemical Society , v.145 , 2023 https://doi.org/10.1021/jacs.2c08513 Citation Details
Fedik, Nikita and Nebgen, Benjamin and Lubbers, Nicholas and Barros, Kipton and Kulichenko, Maksim and Li, Ying Wai and Zubatyuk, Roman and Messerly, Richard and Isayev, Olexandr and Tretiak, Sergei "Synergy of semiempirical models and machine learning in computational chemistry" The Journal of Chemical Physics , v.159 , 2023 https://doi.org/10.1063/5.0151833 Citation Details
Feng, Kaibo and Raguram, Elaine Reichert and Howard, James R and Peters, Ellyn and Liu, Cecilia and Sigman, Matthew S and Buchwald, Stephen L "Development of a Deactivation-Resistant Dialkylbiarylphosphine Ligand for Pd-Catalyzed Arylation of Secondary Amines" Journal of the American Chemical Society , v.146 , 2024 https://doi.org/10.1021/jacs.4c09667 Citation Details
Gardner, Kristen E and de_Lescure, Louis and Hardy, Melissa A and Tan, Jin and Sigman, Matthew S and Paton, Robert S and Sarpong, Richmond "Modular synthesis of aryl amines from 3-alkynyl-2-pyrones" Chemical Science , 2024 https://doi.org/10.1039/d4sc04885g Citation Details
Guo, K and Nan, B and Zhou, Y and Guo, T and Guo, Z and Surve, M and Liang, Z and Chawla, NV and Wiest, O and Zhang, X "Can LLMs Solve Molecule Puzzles? A MultimodalCan MultimodalBenchmark for Molecular Structure ElucidationBenchmark Elucidation" , 2025 Citation Details
Guo, T and Chen, X and Wang, Y and Chang, R and Pei, S and Chawla, NV and Wiest, O and Zhang, X "Large Language Model based Multi-Agents: A Survey of Progress and Challenges." 33rd International Joint Conference on Artificial Intelligence (IJCAI 2024) , 2024 Citation Details
Guo, T and Guo, K and Nan, B and Liang, Z and Guo, Z and Chawla, NV and Wiest, O and Zhang, X "What can Large Language Models do in chemistry? A comprehensive benchmark on eight tasks" 37th Conference on Neural Information Processing Systems (NeurIPS 2023) Track on Datasets and Benchmarks. , 2023 Citation Details
(Showing: 1 - 10 of 42)

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