Award Abstract # 1441634
Collaborative Research: VertLife Terrestrial: A complete, global assembly of phylogenetic, trait, spatial and environment characteristics for a model clade

NSF Org: DEB
Division Of Environmental Biology
Recipient: LOUISIANA STATE UNIVERSITY
Initial Amendment Date: September 8, 2014
Latest Amendment Date: February 14, 2017
Award Number: 1441634
Award Instrument: Standard Grant
Program Manager: Katharina Dittmar
kdittmar@nsf.gov
 (703)292-7799
DEB
 Division Of Environmental Biology
BIO
 Directorate for Biological Sciences
Start Date: October 1, 2014
End Date: September 30, 2020 (Estimated)
Total Intended Award Amount: $356,938.00
Total Awarded Amount to Date: $371,638.00
Funds Obligated to Date: FY 2014 = $356,938.00
FY 2016 = $7,300.00

FY 2017 = $7,400.00
History of Investigator:
  • Jacob Esselstyn (Principal Investigator)
    esselstyn@lsu.edu
Recipient Sponsored Research Office: Louisiana State University
202 HIMES HALL
BATON ROUGE
LA  US  70803-0001
(225)578-2760
Sponsor Congressional District: 06
Primary Place of Performance: Louisiana State University & Agricultural and Mechanical College
119 Foster Hall
Baton Rouge
LA  US  70803-2701
Primary Place of Performance
Congressional District:
06
Unique Entity Identifier (UEI): ECQEYCHRNKJ4
Parent UEI:
NSF Program(s): GoLife,
Systematics & Biodiversity Sci
Primary Program Source: 01001415DB NSF RESEARCH & RELATED ACTIVIT
01001617DB NSF RESEARCH & RELATED ACTIVIT

01001718DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 6133, 7689, 9169, 9178, 9251, EGCH
Program Element Code(s): 613300, 737400
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

Terrestrial vertebrates (Tetrapoda) include our own species and represent one of the great and diverse evolutionary radiations that intersect with humans' everyday lives. The four tetrapod classes - birds, mammals, amphibians and reptiles - together comprise ca. 33,000 species, include life histories ranging from aquatic, subterranean, and arboreal to aerial, cover a variety of trophic strategies, and harbor some of the most stunning ecological adaptations. Tetrapods play a significant role in providing diverse ecological functions, and they are vital to biodiversity monitoring efforts. However, significant knowledge gaps remain in the evolutionary relationships, distributions of ecologically important traits, and distributions of species. The project will undertake concerted assembling efforts that will yield near species-level completeness of key evolutionary and ecological attributes thereby establishing a global model system for macroevolution, macroecology, comparative biology and global change research. The compiled trait and spatial data will provide a vital backbone for rigorous conservation monitoring and prioritization. The online analysis and visualization tools will extend successful, existing projects and will be built to be directly usable for other taxa and other Genealogy of Life (GoLife) projects.


Massive parallel sequencing methods will be used to collect new multi-locus genetic information for ca. 4,000 species currently lacking such data. These data will be used to derive a dated posterior tree set that includes all tetrapod species and captures remaining uncertainty. The posterior tree set will be used to calculate evolutionary distinctness and a variety of tree metrics. Together with key collaborators the researchers will compile morphological, ecological and life history trait data for dozens of variables and additionally benefit from phylogenetic imputation to predict missing values. A new tool incorporated into the existing Map of Life infrastructure will link existing species distributional datasets to global environmental data layers and provide broad-scale niche characteristics for all vertebrates together with estimates of uncertainty. Further integration will link these products to online phylogeny visualization tools to allow map- and tree-based discovery and download. Finally, the project will demonstrate the utility of the integrated layers through example biogeographic, conservation and comparative analyses that will highlight the advance in inference and in predictive conservation use arising from near-complete and unbiased global data. The research will also provide online visualizations and tutorials, a museum exhibit developed around the products, a workshop based on VertLife infrastructure, and undergraduate and graduate summer internships.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

Note:  When clicking on a Digital Object Identifier (DOI) number, you will be taken to an external site maintained by the publisher. Some full text articles may not yet be available without a charge during the embargo (administrative interval).

Some links on this page may take you to non-federal websites. Their policies may differ from this site.

(Showing: 1 - 10 of 38)
Demos, Terrence C and Achmadi, Anang S and Handika, Heru and Rowe, Kevin C and Esselstyn, Jacob A "A new species of shrew (Soricomorpha: Crocidura) from Java, Indonesia: possible character displacement despite interspecific gene flow" Journal of Mammalogy , v.98 , 2017 , p.183--193
Eldridge RA, Achmadi AS, Giarla TC, Rowe KC, Esselstyn JA "Geographic isolation and elevational gradients promote lineage diversification in an endemic shrew on Sulawesi" Molecular Phylogenetics and Evolution , v.118 , 2018 , p.306 10.1016/j.ympev.2017.09.018
Eldridge, R.A., Achmadi, A.S., Giarla, T.C., Rowe, K.C., Esselstyn, J.A. "Geographic isolation and elevational gradients promote lineage diversification in an endemic shrew on Sulawesi" Molecular Phylogenetics and Evolution , 2017 10.1016/j.ympev.2017.09.018
Eldridge, RA, AS Achmadi, TC Giarla, KC Rowe, JA Esselstyn "Geographic isolation and elevational gradients promote lineage diversification in an endemic shrew on Sulawesi" Molecular Phylogenetics and Evolution , v.118 , 2018 , p.306 10.1016/j.ympev.2017.09.018
Eldridge, Ryan A and Achmadi, Anang S and Giarla, Thomas C and Rowe, Kevin C and Esselstyn, Jacob A "Geographic isolation and elevational gradients promote diversification in an endemic shrew on Sulawesi" Molecular phylogenetics and evolution , v.118 , 2018 , p.306--317
Esselstyn JA, Achmadi AS, Handika H, Giarla TC, Rowe KC "A new climbing shrew from Sulawesi highlights the tangled taxonomy of an endemic radiation" Journal of Mammalogy , v.100 , 2019 , p.1713 10.1093/jmammal/gyz077
Esselstyn, JA, CH Oliveros, MT Swanson, BC Faircloth "Investigating difficult nodes in the placental mammal tree with expanded taxon sampling and thousands of ultraconserved elements" Genome Biology and Evolution , v.9 , 2017 , p.2308 10.1093/gbe/evx168
Esselstyn, Jacob A. and Achmadi, Anang S. and Handika, Heru and Swanson, Mark T. and Giarla, Thomas C. and Rowe, Kevin C. "Fourteen new, endemic species of shrew (genus Crocidura) from Sulawesi reveal a spectacular island radiation" Bulletin of the American Museum of Natural History , v.454 , 2021 Citation Details
Esselstyn, Jacob A and Achmadi, Anang S and Handika, Heru C and Giarla, Thomas C and Rowe, Kevin and Powell, Roger "A new climbing shrew from Sulawesi highlights the tangled taxonomy of an endemic radiation" Journal of Mammalogy , v.100 , 2019 10.1093/jmammal/gyz077 Citation Details
Esselstyn, Jacob A and Oliveros, Carl H and Swanson, Mark T and Faircloth, Brant C "Investigating difficult nodes in the placental mammal tree with expanded taxon sampling and thousands of ultraconserved elements" Genome Biology and Evolution , v.9 , 2017 , p.2308--232
Esselstyn JA, Oliveros CH, Swanson MT, Faircloth BC "Investigating difficult nodes in the placental mammal tree with expanded taxon sampling and thousands of ultraconserved elements" Genome Biology and Evolution , v.9 , 2017 , p.2308 10.1093/gbe/evx168
(Showing: 1 - 10 of 38)

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

The primary goal of this project was to develop publicly available resources for understanding the evolutionary history of mammals.  The major reason we lacked comprehensive estimates of the relationships among species is that researchers had never obtained any genetic sequences from approximately one of every six living mammal species.  As such, all prior estimates of evolutionary relationships among mammals have been incomplete.  To advance our understanding of mammalian diversity and evolutionary history, we used all publicly available DNA sequences to provide as-comprehensive-as-possible estimates of evolutionary relationships, and we obtained DNA sequences of approximately 600 species of mammals that had never been sequenced. These data and analyses provided new perspectives on the branching pattern and timing of mammalian diversification, including greater resolution among major clades of mammals. Our analyses also revealed extensive variation among mammals in recent rates of diversification, highlighting the ecological factors that promote diversity. The results are now publicly available and have been incorporated into the OneZoom tree of life explorer. Numerous researchers are using our results to test their own hypotheses related to trait evolution, biogeography, and other aspects of mammalian biodiversity.

In addition, data collected for this project made substantial contributions to our efforts to document and describe new species of mammals, to improve available information on the geographic ranges of individual mammal species, and to better understand the ecogeographic conditions that promote diversification in mammals. To date, this grant has supported 13 peer-reviewed publications, with more anticipated.

Throughout this project, junior researchers gained experience in a variety of research areas, including next generation DNA sequencing techniques, comparative genomics, field research on mammals, curation of natural history collections, project management, experimental design, and presentation of research findings. Junior researchers included seven undergraduate students, five graduate students, and five post-doctoral researchers.


Last Modified: 11/12/2020
Modified by: Jacob A Esselstyn

Please report errors in award information by writing to: awardsearch@nsf.gov.

Print this page

Back to Top of page