Award Abstract # 1355059
Climate change effects on coastal wetlands - Linking microbial community composition and ecosystem responses

NSF Org: DEB
Division Of Environmental Biology
Recipient: VIRGINIA COMMONWEALTH UNIVERSITY
Initial Amendment Date: July 4, 2014
Latest Amendment Date: August 12, 2015
Award Number: 1355059
Award Instrument: Continuing Grant
Program Manager: Matthew Kane
mkane@nsf.gov
 (703)292-7186
DEB
 Division Of Environmental Biology
BIO
 Directorate for Biological Sciences
Start Date: July 1, 2014
End Date: June 30, 2018 (Estimated)
Total Intended Award Amount: $779,967.00
Total Awarded Amount to Date: $779,967.00
Funds Obligated to Date: FY 2014 = $452,877.00
FY 2015 = $327,090.00
History of Investigator:
  • Rima Franklin (Principal Investigator)
    rbfranklin@vcu.edu
  • Scott Neubauer (Co-Principal Investigator)
  • Bonnie Brown (Co-Principal Investigator)
Recipient Sponsored Research Office: Virginia Commonwealth University
910 WEST FRANKLIN ST
RICHMOND
VA  US  23284-9005
(804)828-6772
Sponsor Congressional District: 04
Primary Place of Performance: Virginia Commonwealth University
VA  US  23298-0568
Primary Place of Performance
Congressional District:
04
Unique Entity Identifier (UEI): MLQFL4JSSAA9
Parent UEI: WXQLZ1PA6XP3
NSF Program(s): ECOSYSTEM STUDIES,
DYN COUPLED NATURAL-HUMAN,
Cross-BIO Activities
Primary Program Source: 01001415DB NSF RESEARCH & RELATED ACTIVIT
01001516DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 7275, 9169, EGCH
Program Element Code(s): 118100, 169100, 727500
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

Wetlands are dynamic habitats that are found at the interface of terrestrial and aquatic ecosystems. They function to cleanse polluted water, ameliorate floods, recharge groundwater aquifers, and support diverse flora and fauna. Regretfully, half of Earth's wetlands have been lost in recent times due to population expansion, pollution, coastal development, and other human activities. In addition to the ecosystem services mentioned above, wetlands are among the most biogeochemically active habitats on Earth. They have been identified as key sites for carbon sequestration and regulation of greenhouse gas emissions. These environments are very sensitive to environmental perturbation, and the effects of global climate change - especially sea level rise - are already evident. Sea level rise can bring saltwater into historically freshwater wetlands, changing the chemical reactions that take place in the sediment and the composition of soil microbial communities. This research provides a better understanding of freshwater wetland response to saltwater intrusion and specifically focuses on soil microorganisms and their roles in carbon sequestration and greenhouse gas emissions. In addition to its scientific contributions, this project advances both science education and public awareness of the threats facing tidal freshwater wetlands, and includes activities intended to educate the community (grade school children through adults) on basic aspects of environmental science.

Microbial communities have historically been treated as a "black box" due to assumptions that there is a high level of functional redundancy and that microbial population dynamics (e.g., in response to global change) are unimportant. However, numerous recent studies have demonstrated that changes in microbial community composition can directly influence ecosystem process rates, motivating this study of the responses of microbial consortia to disturbance. The overall goal of this research is to link genomics-based characterization of soil microbial communities with process-level measurements of important ecosystem carbon transformations, and to examine their collective responses to environmental change. This research project includes both observational and manipulative experiments in the tidal freshwater and oligohaline marshes of the Pamunkey/York River system in Virginia, a major tributary of Chesapeake Bay. The project combines assessment of wetlands along an existing riverine salinity gradient, as a space-for-time substitution for future saltwater intrusion, with an in situ saltwater addition experiment that characterizes changes in the coupled microbe-plant-soil system. Molecular genetic analyses (16S sequencing, qPCR, and RT-qPCR) of the soil microbial communities, process rate measurements (iron and sulfate reduction, methanogenesis), and ecosystem carbon dioxide and methane exchanges are being used to develop a detailed mechanistic understanding of how compositional changes in microbial communities affect biogeochemical processes. This fundamental knowledge will pave the way for future research that effectively incorporates microbial communities into ecosystem process models.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Dang C, Morrissey EM, Neubauer SC, Franklin RB "Novel microbial community composition and carbon biogeochemistry emerge over time following saltwater intrusion in wetlands" Global Change Biology , v.25 , 2019 , p.549 doi.org/10.1111/gcb.14486
Franklin RB, Morrissey EM, Morina JM "Changes in the abundance and community structure of nitrate-reducing bacteria along a salinity gradient in tidal wetlands" Pedobiologia , v.60 , 2017 , p.21 DOI:10.1016/j.pedobi.2016.12.002
Giannopoulos G, Hartop KR, Brown BL, Franklin RB "Response relationships between CO2 , CH4 and N2O emissions and microbial functional groups in wetland sediments after trace metal addition" bioRxiv , 2019 , p.515809 doi.org/10.1101/515809
Giannopoulos G, Lee DY, Neubauer SC, Brown BL, Franklin RB "A simple and effective sampler to collect undisturbed cores from tidal marshes" bioRxiv , 2019 , p.515825 doi.org/10.1101/515825
Herbert, Ellen R., Paul I. Boon, Amy J. Burgin, Scott C. Neubauer, Rima B. Franklin, Marcelo Ardón, Kristine N. Hopfensperger, Leon P.M. Lamers, and Peter Gell "A global perspective on wetland salinization: Ecological consequences of a growing threat to freshwater wetlands" Ecosphere , v.6 , 2015 , p.206 DOI: 0.1890/ES14-00534.1
Jain M, Tyson JR, Loose M, Ip CLC, Eccles DA, O'Grady J, Malla S, Leggett RM, Wallerman O, Jansen J, Zalunin V, Birney E, Brown BL, Snutch TP, Olsen HE. "MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.x chemistry" F1000Research , v.6 , 2017 , p.760 doi: 10.12688/f1000research.11354.1
Lee, Dong Y., Olivia DeMeo, Robert Thomas, Allison L. Tillett, and Scott C. Neubauer "Design and Construction of an Automated Irrigation System for Simulating Saltwater Intrusion in a Tidal Freshwater Wetland" Wetlands , v.36 , 2016 , p.889 10.1007/s13157-016-0801-4
Morrisey, Ember and Rima B. Franklin "Evolutionary history influences the salinity preference of bacterial taxa in wetland soil" Frontiers in Microbiology , v.6 , 2015 , p.01013 DOI=10.3389/fmicb.2015.01013
Morris, J.T., D.C. Barber, J. Callaway, R. Chambers, S.C. Hagen, C. Hopkinson, B.J. Johnson, J.P. Megonigal, S.C. Neubauer, T. Troxler, C. Wigand. "Contributions of organic and inorganic matter to volume and accretion in tidal wetlands at steady state" Earth's Future , v.4 , 2016 10.1002/2015EF000334
Neubauer SC, Piehler MF, Smyth AR, Franklin RB "Saltwater intrusion modifies microbial community structure and decreases denitrification in tidal freshwater marshes" Ecosystems , 2018 doi.org/10.1007/s10021-018-0312-7

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

Wetlands support diverse plant and animal communities, and perform essential ecosystem services including improving water quality, storing floodwater, helping recharge groundwater aquifers, and recycling nutrients. Wetlands are also important components of the global carbon cycle because they can store large amounts of carbon in their soils and function as both sources and sinks of greenhouse gases such as carbon dioxide and methane.

Wetlands are very sensitive to disturbance, and the effects of global change on these ecosystems are already evident. For example, wetlands in coastal areas are experiencing stress due to sea level rise and more frequent flooding. These changes in hydrology can cause saltwater intrusion wherein saline water moves into ecosystems that have historically been freshwater. This elevated salinity, or "salinization," can stress wetland plants and, eventually, lead to changes in plant community composition and productivity. In addition, increases in salinity can affect the composition and activity of soil microbial communities and alter the types of chemical reactions that take place in soil. The goal of this project was to study the response of this entire plant-microbe-soil system to salinization, with specific focus on how saltwater intrusion into tidal freshwater wetlands can affect greenhouse gas emissions and carbon storage potential.

This research focused on tidal marshes of the Pamunkey/York River system in Virginia, a major tributary of the Chesapeake Bay, and used three approaches: (1) an experimental manipulation wherein we irrigated a freshwater wetland with saline water to mimic saltwater intrusion, (2) a soil transplant experiment where freshwater marsh soils were transplanted to a salt marsh, and (3) an observational study of several wetlands along a riverine salinity gradient. The first two approaches allowed us to study short-term effects of salinization (weeks to years); the latter helped us understand longer term (years to decades) effects.

Some components of the wetland microbial community responded very quickly (within 1 week) to increasing salinity, most likely due to physiological stress.  This initial response was followed by a rather long transition period during which time microbial community composition changed to include more salt-tolerant species with unique functional profiles. For the plant community, coverage, size, and diversity all decreased with salinization. Together, these shifts in microbial and plant communities altered wetland carbon biogeochemistry.

Our findings indicate that rates of methane production are highly sensitive to increasing salinity, with lower rates of methane production at higher salinities. With the gradual and low magnitude of salinity increase in our experimental manipulation, we did not observe any salinity-related changes in soil carbon dioxide production. We did, however, measure a decrease in ecosystem carbon dioxide emissions to the atmosphere, likely due to decreased respiration by the salt-stressed plant community. In contrast, transplanting soils from a freshwater to salt marsh caused a doubling of soil carbon dioxide production that was likely related to the immediate and large change in salinity. Although carbon dioxide and methane emissions to the atmosphere were reduced by saltwater intrusion, there was a similar reduction in plant productivity such that net ecosystem production, a proxy for soil carbon storage, did not change with salinization. This implies that salinization may not have an appreciable effect on the ability of tidal freshwater marshes to build soil and keep pace with rising sea levels.

Our project generated multiple peer-reviewed publications and conference presentations that contribute to ongoing efforts to understand wetland responses to saltwater intrusion and sea level rise. Our findings are also of value to global change ecologists who are developing better ways to incorporate microbial communities into ecosystem models of carbon cycling.

Beyond its contribution to scientific understanding, our project had a broad impact by providing training for 15 undergraduates, 5 graduate students, 3 postdoctoral associates, and 1 high school environmental science teacher.  We are especially proud of our engagement of undergraduates, of which 75% were female and 50% were first generation college students. These participants gained field and laboratory experience in wetlands ecology, microbiology, and molecular genetics, and acquired advanced skills in data analysis and scientific communication. Nearly all of these participants contributed to our public outreach efforts, which focused primarily on public education. We developed and taught a field-based workshop about environmental microbiology, wetland science, and carbon cycling to K-5 students. We also led workshops with two local high schools and delivered presentations to multiple community groups.

  


  

 

  


  

  

 


Last Modified: 03/22/2019
Modified by: Rima B Franklin

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