Award Abstract # 0953694
CAREER: Advancing Macroecology Using Informatics and Entropy Maximization

NSF Org: DEB
Division Of Environmental Biology
Recipient: UTAH STATE UNIVERSITY
Initial Amendment Date: March 4, 2010
Latest Amendment Date: September 9, 2011
Award Number: 0953694
Award Instrument: Continuing Grant
Program Manager: Alan Tessier
DEB
 Division Of Environmental Biology
BIO
 Directorate for Biological Sciences
Start Date: March 15, 2010
End Date: February 29, 2016 (Estimated)
Total Intended Award Amount: $649,999.00
Total Awarded Amount to Date: $657,499.00
Funds Obligated to Date: FY 2010 = $135,000.00
FY 2011 = $522,499.00
History of Investigator:
  • Ethan White (Principal Investigator)
    ethanwhite@ufl.edu
Recipient Sponsored Research Office: Utah State University
1000 OLD MAIN HL
LOGAN
UT  US  84322-1000
(435)797-1226
Sponsor Congressional District: 01
Primary Place of Performance: Utah State University
1000 OLD MAIN HL
LOGAN
UT  US  84322-1000
Primary Place of Performance
Congressional District:
01
Unique Entity Identifier (UEI): SPE2YDWHDYU4
Parent UEI:
NSF Program(s): POP & COMMUNITY ECOL PROG
Primary Program Source: 01001011DB NSF RESEARCH & RELATED ACTIVIT
01001112DB NSF RESEARCH & RELATED ACTIVIT

01001213DB NSF RESEARCH & RELATED ACTIVIT

01001314DB NSF RESEARCH & RELATED ACTIVIT

01001415DB NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 1045, 1182, 1187, 1355, 9169, 9178, 9251, EGCH, SMET
Program Element Code(s): 118200
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.074

ABSTRACT

Climate change, invasive species and other important factors impacting ecological systems operate at continental to global scales. At these scales, conducting experiments can be difficult, if not impossible. Therefore, ecologists increasingly rely on analyses of large scale observational data to predict how these systems will respond to increasing changes in climate and habitat. Progress in this area of research has been slowed by the large number of patterns used to characterize ecological structure, and by the fact that most research focuses on a single group of species thus limiting the generality of the results. This project will increase the speed at which knowledge of ecological systems is acquired by characterizing the relationships among ecological patterns and focusing research on the small number of key patterns that need to be studied to understand the behavior of ecological systems. This will be accomplished using advanced methods from physics that characterize the most likely form of an ecological pattern given a small number of constraints on the system. This research will test the performance of this approach using data on wide variety of species. This method will then be combined with established ecological models to predict a suite of major ecological patterns using only a small number of environmental variables.

This project will improve how ecologists test and establish the generality of theories by educating ecologists in advanced computational methods through online and university courses, by providing web-based resources on the collections of data that are available and how to utilize them, and by automating complicated database tasks using computer programs that download, configure, and install optimized versions of ecological databases, thus allowing the rapid incorporation of available data into research projects. This combined research and education program has the potential to substantially improve the rate at which the field of ecology advances by focusing the research effort on a smaller number of patterns and processes, and by allowing ecologists to rapidly determine if a given pattern or hypothesis is general and if not how it varies among ecological systems.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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(Showing: 1 - 10 of 23)
Coyle, Jessica R.; Hurlbert, Allen H.; White, E.P. "Opposing mechanisms drive diversity patterns of core and occasional bird species" American Naturalist , v.181 , 2013 , p.E83-E90 10.1086/669903
Coyle, J.R., A.H. Hurlbert, and E.P. White "Opposing mechanisms drive diversity patterns of core and occasional bird species" American Naturalist , v.181 , 2013 , p.E83 10.1086/669903
Desjardins-Proulx P., E.P. White, J.J. Adamson, K. Ram, T. Poisot, and D. Gravel "The case for open preprints in biology" PLOS Biology , v.11 , 2013 , p.e1001563 10.1371/journal.pbio.1001563
Locey, K.J., and D.J. McGlinn "Efficient algorithms for sampling feasible sets of abundance distributions" PeerJ Preprints , 2014 10.7287/peerj.preprints.78v2
Locey, K.J. and E.P. White "How species richness and total abundance constrain the distribution of abundance" Ecology Letters , v.16 , 2013 , p.1177 10.1111/ele.12154
McGlinn, D.J., X. Xiao, and E.P. White "An empirical comparison of four variants of a universal species-area relationship" PeerJ , v.1 , 2013 , p.e212 10.7717/peerj.212
McGlinn, D.J., X. Xiao, and E.P. White "Exploring spatially explicit predictions of the Maximum Entropy Theory of Ecology" Global Ecology and Biogeography , v.24 , 2015 , p.675 10.1111/geb.12295
Mislan, KAS and Heer, Jeffrey M and White, Ethan P "Elevating the status of code in ecology" Trends in ecology \& evolution , v.31 , 2016 , p.4--7 10.1016/j.tree.2015.11.006
Morris, B.D. and E.P. White "The EcoData Retriever: improving access to existing ecological data" PLOS One , v.8 , 2013 , p.e65848 10.1371/journal.pone.0065848
Supp, S. R.; Xiao, X.; Ernest, S. K. M.; White, E. P. "An experimental test of the response of macroecological patterns to altered species interactions" ECOLOGY , v.93 , 2012 , p.2505-2511
Teal, Tracy K and Cranston, Karen A and Lapp, Hilmar and White, Ethan and Wilson, Greg and Ram, Karthik and Pawlik, Aleksandra "Data carpentry: workshops to increase data literacy for researchers" International Journal of Digital Curation , v.10 , 2015 , p.135--143 10.2218/ijdc.v10i1.351
(Showing: 1 - 10 of 23)

PROJECT OUTCOMES REPORT

Disclaimer

This Project Outcomes Report for the General Public is displayed verbatim as submitted by the Principal Investigator (PI) for this award. Any opinions, findings, and conclusions or recommendations expressed in this Report are those of the PI and do not necessarily reflect the views of the National Science Foundation; NSF has not approved or endorsed its content.

The intellectual merit and broader impacts of this grant combine to help ecological research maximally benefit from the large amounts of data that are increasingly available for ecological systems and from new general theories that predict large numbers of ecological patterns simultaneously.

Our research compares approaches to modeling ecological systems to find models that accurately describe patterns of diversity across different ecosystems and types of species. We do this by comparing the predictions of theoretical models to large compilations of ecological data from citizen science, government surveys, and academic research. We found that a new group models based on statistical physics showed potential for explaining a number of ecological patterns with only a small amount of information, but that these models exhibited several important deficiencies. We found that simple models based on birth, death, dispersal, and growth of organisms provided better descriptions of ecological patterns than the statistical physics approaches. We also developed a new set of methods for understanding how much information about ecological processes is present in different ecological patterns by describing the possible forms that these patterns can take. In combination our research is helping to change our approaches to testing ecological theory by leading the way in using data from across ecosystems, across the diversity of life, and across the array of predictions made by may theories.

Our broader impacts involved educational and research tool initiatives that are targeted across scientific and engineering disciplines with the intent of broadly improving the acquisition of data skills and development of data scientists. This makes the kind of data-intensive research we do possible for the next generation of scientists through a combination of training, software, and access to information. We trained thousands of scientists online and hundreds in classrooms and workshops on how to efficiently create, store, manage, and analyze data. We created software that is widely used to automate data cleaning and restructuring tasks so that scientists can focus on doing science. We created online resources to help scientists quickly find the data they need to answer a question and learn how to work with it. We wrote a series of papers on best practices for data management and scientific computing that have been widely read and are having a major impact on how scientists conduct research.

In addition to these broader community wide efforts, seven graduate students (including a veteran, two first-generation college students, an underrepresented minority, and a student with a chronic illness), two undergraduates, and two postdoctoral researchers, participated in this research and received in-depth training in advanced data and computational approaches to science. This prepared them for jobs in a diverse array of industries. Trainees from this grant are currently employed in the technology industry, government funded research organizations, research universities, and higher education.


Last Modified: 05/23/2016
Modified by: Ethan P White

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